Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq101 251 6e-62 seq208 109 4e-19 >seq101 Length=648506 Score = 251 bits (278), Expect = 6e-62 Identities = 663/1000 (66%), Gaps = 24/1000 (2%) Strand=Plus/Minus Query 65806 AAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865 ||||| ||||| ||||||||||| || | | |||| || |||||||| |||||| Sbjct 111616 AAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTT 111557 Query 65866 TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925 ||| ||||| || || |||||||| ||||| || || || ||||| || | || || Sbjct 111556 TCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTC-TGACAA 111498 Query 65926 C-ACATGCACGATACGTCGCAAT--TGTTCGAAATCAAAATGTTTAGGACGATCGGGAGT 65982 | || || | || ||| | | || |||||| || ||| | || | Sbjct 111497 CGACTTGA--GTAACCTCGTGAAGCTTTTGGAAATCGTAA-GTT-----CCCTCATTCAT 111446 Query 65983 GCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042 | | |||||| | || || |||| || || | ||| ||| ||| | || || Sbjct 111445 GTC------CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATC 111392 Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102 || || | || ||||||||||| ||||||| ||| || ||| |||||||| | || Sbjct 111391 TGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTT 111332 Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || ||| || ||||| ||||||||||||||||| | |||| | ||| | |||||||| Sbjct 111331 CTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTC 111272 Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-C 66221 | ||| | ||| | |||| || |||||| | || || | || | | | || | Sbjct 111271 AGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT-CTTGCGACCTC 111213 Query 66222 TACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281 |||||| || ||| || ||||| ||| || || || |||| || | || Sbjct 111212 TACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA 111153 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 | ||||| | | || ||||| || | |||||| | | || ||| ||||| || Sbjct 111152 ACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCA 111093 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || ||||| || ||||| | ||| ||||| ||||| || || || || || ||| Sbjct 111092 TGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGC 111033 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 |||| || || || | ||| |||||||| || | || || ||||| || || || |||| Sbjct 111032 CGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGA 110973 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 || || | || ||| ||| ||||||||||||||||| | ||| || |||| Sbjct 110972 CTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGA 110913 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581 | || || | ||||||||||| ||||| || || || ||||| ||| ||||| | | Sbjct 110912 AAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCAC 110853 Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 | || || || ||||| || ||||||||||| || || | || ||||| || Sbjct 110852 CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAG 110793 Query 66642 CACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 |||| || | | || |||| || ||||| || |||| || | ||| Sbjct 110792 CACATGTCTTGAGGGTATCATAAATA--CCATCAATACTATCCTCCTTCATATCAATGAG 110735 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | ||||||| ||| || | || ||||| | || ||||| || || || | ||||| Sbjct 110734 GAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 110675 Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 || ||||| | | ||||| ||||| ||||| ||| Sbjct 110674 TGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATG 110635 Score = 107 bits (118), Expect = 2e-18 Identities = 314/475 (66%), Gaps = 8/475 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| |||||||| || | | || ||| |||| | || |||||||| ||||| Sbjct 112339 ATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGT 112280 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| || |||| | ||||||||| || | |||| |||| | | | || | Sbjct 112279 CTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAG-TAATCTTGCCCATTGTGGGGT 112221 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| || || ||| || | | ||||||||| || |||| Sbjct 112220 CTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCA 112161 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTCA 65314 | | || || ||| || |||||||||||||||||||| || || | | ||| Sbjct 112160 TTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTG-ATGTCA 112102 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 |||||| | ||||| || | ||||||| | || || || || || ||| Sbjct 112101 GCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATG 112042 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGATGACTT 65432 |||||||| || |||| |||| ||||| |||| | || | | || | |||| Sbjct 112041 TTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGC--AGCCATGGGTTAACAACTT 111984 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||| || || | || |||||||| |||||||| || ||| ||||||||| | | Sbjct 111983 GGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACT 111924 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | || || |||||||| | || || |||||||| ||||| || | ||| Sbjct 111923 CGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAA 111869 >seq208 Length=98604 Score = 109 bits (120), Expect = 4e-19 Identities = 227/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || || || |||||||| | || ||| |||| ||| Sbjct 38721 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 38780 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203 || || ||| | | || ||| | | | | ||| | | ||||||| Sbjct 38781 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 38840 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || ||||| || || || ||||| || ||||| ||||| | | || || Sbjct 38841 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 38900 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || || ||| | | ||||| ||||| |||||||| ||||| ||| ||| Sbjct 38901 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 38960 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| ||||||| || | ||| | | ||||||||||| ||||| | ||| | || Sbjct 38961 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAAGCC 39020 Query 61384 GAACGTGAAC-GAT-TGTTCAATGCCATCGAGAC 61415 ||| |||| || | |||||||| || ||||| Sbjct 39021 CAAC--GAACATATCTCTTCAATGCAATTGAGAC 39052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566880721840