Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_032108.1
Length=589068
Score E
Sequences producing significant alignments: (Bits) Value
seq166 87.8 7e-12
seq112 87.8 7e-12
>seq166
Length=821840
Score = 87.8 bits (96), Expect = 7e-12
Identities = 212/316 (67%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787
|||| || ||||||| ||| || ||| || | | ||||| || ||||| | ||||
Sbjct 571953 TTGACAATATCGTAATAGATAATCGACATTCCCATAGCTTCTGCCAGAACAGATAGCTGA 572012
Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846
|||||||| | || ||| || | |||||| || || ||||| | | || | |||
Sbjct 572013 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 572072
Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906
||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| ||
Sbjct 572073 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 572131
Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965
| |||| || | | | ||| | ||| ||||| |||| || | |||| ||| |
Sbjct 572132 TGCAAGAACGATAATCTCAGCAATGGCTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 572190
Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025
| || || || || ||||| || || | | ||| || | | ||||||| ||
Sbjct 572191 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 572250
Query 13026 CAATGCAGAAGCATCC 13041
||||||| ||||||||
Sbjct 572251 CAATGCAAAAGCATCC 572266
>seq112
Length=1182619
Score = 87.8 bits (96), Expect = 7e-12
Identities = 212/316 (67%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787
|||| || ||||||| ||| || ||| || | | ||||| || ||||| | ||||
Sbjct 571917 TTGACAATATCGTAATAGATAATCGACATTCCCATAGCTTCTGCCAGAACAGATAGCTGA 571976
Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846
|||||||| | || ||| || | |||||| || || ||||| | | || | |||
Sbjct 571977 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 572036
Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906
||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| ||
Sbjct 572037 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 572095
Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965
| |||| || | | | ||| | ||| ||||| |||| || | |||| ||| |
Sbjct 572096 TGCAAGAACGATAATCTCAGCAATGGCTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 572154
Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025
| || || || || ||||| || || | | ||| || | | ||||||| ||
Sbjct 572155 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 572214
Query 13026 CAATGCAGAAGCATCC 13041
||||||| ||||||||
Sbjct 572215 CAATGCAAAAGCATCC 572230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1884880821325283
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |