Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq166 87.8 7e-12 seq112 87.8 7e-12 >seq166 Length=821840 Score = 87.8 bits (96), Expect = 7e-12 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787 |||| || ||||||| ||| || ||| || | | ||||| || ||||| | |||| Sbjct 571953 TTGACAATATCGTAATAGATAATCGACATTCCCATAGCTTCTGCCAGAACAGATAGCTGA 572012 Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846 |||||||| | || ||| || | |||||| || || ||||| | | || | ||| Sbjct 572013 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 572072 Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906 ||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| || Sbjct 572073 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 572131 Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965 | |||| || | | | ||| | ||| ||||| |||| || | |||| ||| | Sbjct 572132 TGCAAGAACGATAATCTCAGCAATGGCTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 572190 Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025 | || || || || ||||| || || | | ||| || | | ||||||| || Sbjct 572191 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 572250 Query 13026 CAATGCAGAAGCATCC 13041 ||||||| |||||||| Sbjct 572251 CAATGCAAAAGCATCC 572266 >seq112 Length=1182619 Score = 87.8 bits (96), Expect = 7e-12 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787 |||| || ||||||| ||| || ||| || | | ||||| || ||||| | |||| Sbjct 571917 TTGACAATATCGTAATAGATAATCGACATTCCCATAGCTTCTGCCAGAACAGATAGCTGA 571976 Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846 |||||||| | || ||| || | |||||| || || ||||| | | || | ||| Sbjct 571977 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 572036 Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906 ||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| || Sbjct 572037 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 572095 Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965 | |||| || | | | ||| | ||| ||||| |||| || | |||| ||| | Sbjct 572096 TGCAAGAACGATAATCTCAGCAATGGCTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 572154 Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025 | || || || || ||||| || || | | ||| || | | ||||||| || Sbjct 572155 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 572214 Query 13026 CAATGCAGAAGCATCC 13041 ||||||| |||||||| Sbjct 572215 CAATGCAAAAGCATCC 572230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884880821325283