Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value SEQ13821 558 1e-156 seq1569 84.2 7e-14 seq615 80.6 8e-13 >SEQ13821 Length=874 Score = 558 bits (618), Expect = 1e-156 Identities = 423/496 (85%), Gaps = 2/496 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 TACGCACGCAAGTGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 276 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||| ||| ||||||||||||| |||||||||| | |||| | Sbjct 277 GTGGTTTAATTCGAAGCAATGCGCAGAACCTTACCAACCCTTGACATCCCCGGACCGGCC 336 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | |||| || | |||| |||||| || | | |||||||||| ||||||| ||||||||| Sbjct 337 TGGAGACAG-GTCTTCCACTTCGGTGGCCGG-GTGACAGGTGCTGCATGGCTGTCGTCAG 394 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 395 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTGCCAGTTAC 454 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 455 CATCATTAAGTTGGGGACTCTAGTAATACTGCCGGTGACAAACCGGAGGAAGGTGGGGAT 514 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| |||||||| |||||| || ||||||||||||||||||||||| |||| Sbjct 515 GACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATAC 574 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||| | ||||| |||||| ||||| | | |||||||| || ||| ||||||| Sbjct 575 AAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG 634 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 |||||||||||||||| |||||| |||||||||||||||||| |||||| |||| || Sbjct 635 GAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCAC 694 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 695 GGTGAATACGTTCCCG 710 >seq1569 Length=2341 Score = 84.2 bits (92), Expect = 7e-14 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||||| | | ||| |||||||| || || | ||||||| | | | |||||| | Sbjct 2123 GGGACCAAGACAAGTCATCATGGCCTAAATATTGTGGGCTATAGATGCGCTACATACTCC 2182 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC- 414 |||||||| | || ||| | ||| | |||| |||| || ||||| | | || Sbjct 2183 TATACAAAGAGATGCAAAAATGTGAGTTTAAGCTAATCTCAAAAAGTAGGATAGAATTAT 2242 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||| ||||||||| || ||||||| ||||| ||||| ||||||||||| |||| || Sbjct 2243 GGAATGTAGTCTGAAATTCGACTACATGAATAAGGAATTACTAGTAATCGTGAATCACCA 2302 Query 475 TGCTACGGTGAAT 487 | |||||| || Sbjct 2303 CGTCACGGTGGAT 2315 >seq615 Length=3938 Score = 80.6 bits (88), Expect = 8e-13 Identities = 114/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 330 TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCA 389 ||||||| | |||||| ||| | |||||||| | || ||| | ||| | |||| Sbjct 2193 TGGGCTATAGACGTGCCACATACTCCTATACAAAGAGATGCAAAAATGTGAGTTTAAGCT 2134 Query 390 AATCCCATAAAGTTGTTCTCAGTTC-GGATTGTAGTCTGCAACTCGACTATATGAAGCTG 448 |||| || ||||| | | || ||||||||||||| || ||||||| ||||| | Sbjct 2133 AATCTCAAAAAGTAGGATAGAATTATGGATTGTAGTCTGAAATTCGACTACATGAATAAG 2074 Query 449 GAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 |||| ||||||||||| |||| || | |||||| || Sbjct 2073 GAATTACTAGTAATCGTGAATCACCACGTCACGGTGGAT 2035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503772369600