Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq153 300 3e-79 seq276 295 1e-77 seq775 185 1e-44 >seq153 Length=8578 Score = 300 bits (332), Expect = 3e-79 Identities = 239/281 (85%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 689 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 746 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 747 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 806 Query 121 GAACGGGGTGATTCTCT-CCTGCACATCGTAGTCGGATACGAATAGG-CTTC-GGCCCCG 177 ||||| ||||||| | | || ||||||||||||||||||||||||| |||| ||||| | Sbjct 807 GAACGCGGTGATTTTATACCCACACATCGTAGTCGGATACGAATAGGCCTTCGGGCCCTG 866 Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237 | |||||| || ||||||| | | |||| | | | | | ||||| || || Sbjct 867 CATCTTAGCTGGTTGGCAACGACCTCATGGGGGAACACCCGTGGGGTTAGCTGACGTCTT 926 Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||||||||||||| ||| ||||||||||||| ||||| Sbjct 927 GCAATTTCACCATGCGTGGGGTTAAATCCTTTGCATACGAC 967 >seq276 Length=3217 Score = 295 bits (326), Expect = 1e-77 Identities = 235/279 (84%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 612 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 669 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 670 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 729 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||| | ||||||| || ||||||||||||||||||||||||| ||| ||||| | | Sbjct 730 GAAAGCGGTGATTTATACCCACACATCGTAGTCGGATACGAATAGGCCTTTGGCCCTGCA 789 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||| || ||||||| | | |||| | | | | | ||||| || |||| Sbjct 790 TCTTAGCTGGTTGGCAACGATCTCATGGGGGAACACCCGTGGGATTAGCTGACGTCTTGC 849 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||||||||||| ||| ||||||||||||| ||||| Sbjct 850 AATTTCACCATGCGTGGGGTTAAATCCTTTGCATACGAC 888 >seq775 Length=9576 Score = 185 bits (204), Expect = 1e-44 Identities = 123/134 (92%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 ATAATTGGTTTTTGCGGCTGTCTGACAAGGCAGTGCCGCGAAGCTACCATCTGCTGGAAA 60 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCT-CCTGCACA 145 ||||||||||| ||||||||||||||||||||||||| | ||||| ||| | || |||| Sbjct 61 ATGGCTGAACGTCTCTAAGTCAGAATCCATGCCAGAAAGCGGTGA-TCTATACCCACACA 119 Query 146 TCGTAGTCGGATAC 159 |||||||||||||| Sbjct 120 TCGTAGTCGGATAC 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819079888640