Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 277 1e-69 SEQ14127 118 8e-22 >SEQ14673 Length=3941 Score = 277 bits (306), Expect = 1e-69 Identities = 1219/1886 (65%), Gaps = 64/1886 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| |||||||| || | | || ||| |||| | || |||||||| ||||| Sbjct 749 ATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGT 808 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| || |||| || ||||||||| || | |||| |||| | | | || | Sbjct 809 CTTGAGACCCAATTTCCAACCAGCGAAATGCATGGAAG-TAATCTTGCCCATTGTGGGGT 867 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| || || ||| || | | |||||| || || |||| Sbjct 868 CTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCA 927 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || || ||| || |||||||||||||||||||| || | | | | ||| Sbjct 928 TTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGT-GCCTTGATGTCA 986 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCA 65372 |||||| | ||||| || | ||||||| ||| || || || || || || Sbjct 987 GCTGGAATGTTGGGAATGTTTTGAATAGAACCAC--CGTCAGCGATGATACGGTTCTTCA 1044 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGAC 65430 | |||||||| || |||| |||| ||||| |||| | || | | || | || Sbjct 1045 TGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGC--AGCCATGGGTTAACAAC 1102 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||| || || | || |||||||| |||||||| || ||| ||||||||| | Sbjct 1103 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 1162 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || || || |||||||| | || || |||||||| ||||| || | ||| Sbjct 1163 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 1222 Query 65551 GTTTCGCAATCCGT-TCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGG 65607 ||| || | |||| | ||| | || | | ||| ||||||| ||| | |||| Sbjct 1223 GTTGCGGACACCGTGTTGTTTGATTGATTTCTT-CAAGCTATCCCAGTCCCAAAGGTCGG 1281 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | | || || ||| ||||||||| | ||| || || | | | ||||| Sbjct 1282 TAGGT-GTA-AC-TCC-----CCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGA 1333 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA-CAGCTGGTCTCGAGTG 65726 || | || | || || ||| |||||| |||| | | | | | | || | | Sbjct 1334 GCCTTCGTAAGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAA-G 1392 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCT--CATC-GCTC- 65782 | || ||||| || ||||| || | || | ||| | |||| | | || | | Sbjct 1393 CAGCGTGGTAAATAGTTTCGAAGAT---TTGAAT--GTTGAGGTGCTTGGCTTCAGGTGA 1447 Query 65783 -TCGTACGGCATACCCATCAGGACA-AAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 || | || | | | | || | |||| ||||| ||||||||||| || | | ||| Sbjct 1448 TTCAAATGGTA-ATCGAAGAGCCAAGAAAGCATCGGCAAGACCTTGAACACCGACAGCGA 1506 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 | || |||||||| |||||| ||| ||||| || || |||||||| ||||| || | Sbjct 1507 TAGGTCGATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAA 1566 Query 65901 TAATGCGATTCAAATTGCGTGTCACC-ACATGCACGATACGTCGCAAT--TGTTCGAAAT 65957 | || ||||| || | || || | || || | || ||| | | || ||||| Sbjct 1567 TGATCTTGTTCAAGTTTC-TGACAACGACTTGA--GTAACCTCGTGAAGCTTTTGGAAAT 1623 Query 65958 CAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATG 66017 | || ||| | || || | |||||| | || || |||| || | Sbjct 1624 CGTAA-GTT-----CCCTCATTCATGTC------CACAAATGTTGGGAGAGCAATGGAAG 1671 Query 66018 CGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGAT 66077 | | ||| ||| ||| | || || || || | || ||||||||||| ||||||| || Sbjct 1672 CCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAAT 1731 Query 66078 TACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGT 66137 | || ||| |||||||| | |||| ||| |||||||| ||||||||||||||||| Sbjct 1732 TGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTTATTGCATGCATCCTTGT 1791 Query 66138 ACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGC 66197 | | |||| | ||| | |||||||| ||| | ||| | |||| || |||||| Sbjct 1792 AAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTT 1851 Query 66198 GTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCG 66256 | || || | || | | | || ||||||| || ||| || ||||| ||| Sbjct 1852 GGGCTTTGATGGT-CTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCA 1910 Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316 || || || |||| || | || | ||||| | | || ||||| || | |||| Sbjct 1911 AACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAA 1970 Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376 || | | || ||| ||||| ||| || ||||| || ||||| | ||| ||||| ||| Sbjct 1971 TCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGA 2030 Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436 || || || || || || |||| || || || || | ||| |||||||| || | Sbjct 2031 TCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACA 2090 Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496 || || ||||| || || || |||| || || | || ||| ||| ||||||||| Sbjct 2091 TCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGG 2150 Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTG 66556 |||||||| | ||| |||||||| || || | ||| ||||||| ||||| || || Sbjct 2151 TCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTA 2210 Query 66557 CCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATA 66616 || ||||| ||| ||||| | || || || || ||||| || ||||||||| Sbjct 2211 CCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATA 2270 Query 66617 CCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAA 66674 || || || | || ||||| |||||| || | | || |||| || |||| Sbjct 2271 CCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATA--CCATCAA 2328 Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGG 66734 | ||| |||| || | |||| ||||||| ||| || | || ||||| | | Sbjct 2329 TACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAG 2388 Query 66735 CCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCT 66794 | ||||| || || || | ||||| || ||||| | | ||||| ||||| |||| Sbjct 2389 CGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCT 2448 Query 66795 CGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATT 66854 | ||| | ||||| | || || ||||| || | ||| ||||| | | | || Sbjct 2449 CAATGGCGCTCTCAATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATTTGTT 2508 Query 66855 GAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTG 66913 | || ||||| || | ||| | || | | | ||| || || || ||||||||| Sbjct 2509 GTGGACGTTC-TGCAACTTTTCCATCGAGTCGAAGAAGGTACGATCGCTCGAGGGTCTTG 2567 Query 66914 ATACCAAAGTACGAGTAATTGAAATC 66939 | || ||||| ||||||||| || Sbjct 2568 AATCCGAAGTATTGGTAATTGAAGTC 2593 >SEQ14127 Length=21342 Score = 118 bits (130), Expect = 8e-22 Identities = 229/334 (69%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || || || |||||||| | || ||| |||| ||| Sbjct 14037 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 14096 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203 || || ||| | | || ||| | | | | ||| | | ||||||| Sbjct 14097 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 14156 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || ||||| || || || ||||| || ||||| ||||| | | || || Sbjct 14157 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 14216 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || || ||| | | ||||| ||||| |||||||| ||||| ||| ||| Sbjct 14217 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 14276 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 |||||| ||||||| || | ||| | | ||||||||||| ||||||| ||| | || Sbjct 14277 GAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATCAAGGAACAAGCC 14336 Query 61384 GAACGTGAAC-GAT-TGTTCAATGCCATCGAGAC 61415 ||| |||| || | |||||||| || ||||| Sbjct 14337 CAAC--GAACATATCTCTTCAATGCAATTGAGAC 14368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397494665476400