Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq4061 91.5 6e-13 >seq4061 Length=6269 Score = 91.5 bits (100), Expect = 6e-13 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787 |||| || ||||||| ||| || ||| |||| | ||||| || ||||| | |||| Sbjct 966 TTGACAATATCGTAATAGATAATCGACATTCCTATAGCTTCTGCCAGAACAGATAGCTGA 907 Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846 |||||||| | || ||| || | |||||| || || ||||| | | || | ||| Sbjct 906 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 847 Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906 ||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| || Sbjct 846 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 788 Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965 | |||| || | | | ||| | ||| ||||| |||| || | |||| ||| | Sbjct 787 TGCAAGAACGATAATCTCAGCAATGGCTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 729 Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025 | || || || || ||||| || || | | ||| || | | ||||||| || Sbjct 728 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 669 Query 13026 CAATGCAGAAGCATCC 13041 ||||||| |||||||| Sbjct 668 CAATGCAAAAGCATCC 653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884520888130555