Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_032108.1
Length=589068
Score E
Sequences producing significant alignments: (Bits) Value
seq4061 91.5 6e-13
>seq4061
Length=6269
Score = 91.5 bits (100), Expect = 6e-13
Identities = 213/316 (67%), Gaps = 4/316 (1%)
Strand=Plus/Minus
Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787
|||| || ||||||| ||| || ||| |||| | ||||| || ||||| | ||||
Sbjct 966 TTGACAATATCGTAATAGATAATCGACATTCCTATAGCTTCTGCCAGAACAGATAGCTGA 907
Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846
|||||||| | || ||| || | |||||| || || ||||| | | || | |||
Sbjct 906 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 847
Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906
||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| ||
Sbjct 846 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 788
Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965
| |||| || | | | ||| | ||| ||||| |||| || | |||| ||| |
Sbjct 787 TGCAAGAACGATAATCTCAGCAATGGCTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 729
Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025
| || || || || ||||| || || | | ||| || | | ||||||| ||
Sbjct 728 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 669
Query 13026 CAATGCAGAAGCATCC 13041
||||||| ||||||||
Sbjct 668 CAATGCAAAAGCATCC 653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1884520888130555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |