Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq960 197 8e-49 seq1726 170 1e-40 seq1590 86.0 3e-15 >seq960 Length=14197 Score = 197 bits (218), Expect = 8e-49 Identities = 114/117 (97%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 4844 GAACCCAAAGACTTTGATTTCTCGTGAGGTGCCGAGCGAGTCAAAAAGATAACATCGCCC 4785 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4784 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 4728 >seq1726 Length=1104 Score = 170 bits (188), Expect = 1e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| Sbjct 981 GAACACAAAGACTTTGATTTCTCGTGAGGTTCCGAGCGAGTCAAAAAGATAACATCGCCC 1040 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||||||| |||||| ||||||||||| ||||||||||||||||| |||| Sbjct 1041 GATCACTAGTCGGCACAGTTTATGGTTAAGACTAAGACGGTATCTGATCGTCCTCGA 1097 >seq1590 Length=53781 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 42 CAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGT 101 ||| | |||||||||||| | | |||||||||||||||||| |||||||||||||||||| Sbjct 30574 CAAGAAGATAACATCGCCAGCTTCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGT 30515 Query 102 ATCTG 106 | ||| Sbjct 30514 ACCTG 30510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278389886250