Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq960 517 2e-144
seq1119 100 5e-19
>seq960
Length=14197
Score = 517 bits (572), Expect = 2e-144
Identities = 303/314 (96%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 4413 TGGTTCGGCCGGGCCTTTCCTTCTGGGGAGCCGCATGCCCTTCACTGGGTGTGTCGGGGA 4472
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4473 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 4532
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4533 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 4592
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4593 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 4652
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 4653 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 4712
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 4713 ACGAAAGTTAGGGG 4726
>seq1119
Length=6051
Score = 100 bits (110), Expect = 5e-19
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|||||||| ||||||| |||| |||| | ||||||||||| | || ||| || |||
Sbjct 691 TAGGGATATTCGGGGGCATCAGCCTTCAGTAGTCAGAGGTGAGACTCGACGATCTACTGA 750
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298
||||| ||||||||||||| || ||||| ||||||||||||||
Sbjct 751 AGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915164536000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |