Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq960 852 0.0 seq3754 82.4 2e-13 seq3484 75.2 3e-11 >seq960 Length=14197 Score = 852 bits (944), Expect = 0.0 Identities = 492/504 (98%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 4256 GTACTCATTCCAATTACAAGACTCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 4197 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4196 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 4137 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 4136 TCTCAGGCTCCTTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 4077 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4076 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 4017 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| Sbjct 4016 CAAGGCCATGCGATTCGTTAGGTTATTATGAATCACCAGGGAGCCCCGAAGGGCATTGGT 3957 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3956 TTTTTATCTAATAAACACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 3897 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3896 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 3837 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 3836 GCCATTCGCAGTTTCACAGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCTTTG 3778 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 3777 AGACAAGCATATGACTACTGGCAG 3754 >seq3754 Length=61660 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 5/68 (7%) Strand=Plus/Minus Query 68 TCGGGATTGGGTAATTTGCGCGCCTGC-----TGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||||||||||||| |||| |||||||| ||||||| ||||||||||| |||||||| Sbjct 20562 TCGGGATTGGGTAGTTTGTGCGCCTGCCCTGCTGCCTTCTTTGGATGTGGTGGCCGTTTC 20503 Query 123 TCAGGCTC 130 |||||||| Sbjct 20502 TCAGGCTC 20495 >seq3484 Length=19742 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/64 (88%), Gaps = 5/64 (8%) Strand=Plus/Minus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 ||||||||||||||||||||| |||| ||||| ||||||| |||||||||||| ||| Sbjct 6612 GGGTAATTTGCGCGCCTGCTG----CCTTAGATGTAGTAGCCG-TTCTCAGGCTCCTTCT 6558 Query 136 CCGG 139 |||| Sbjct 6557 CCGG 6554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510341472000