Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq960 852 0.0
seq3754 82.4 2e-13
seq3484 75.2 3e-11
>seq960
Length=14197
Score = 852 bits (944), Expect = 0.0
Identities = 492/504 (98%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4256 GTACTCATTCCAATTACAAGACTCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 4197
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4196 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 4137
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 4136 TCTCAGGCTCCTTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 4077
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4076 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 4017
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 4016 CAAGGCCATGCGATTCGTTAGGTTATTATGAATCACCAGGGAGCCCCGAAGGGCATTGGT 3957
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3956 TTTTTATCTAATAAACACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 3897
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3896 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 3837
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 3836 GCCATTCGCAGTTTCACAGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCTTTG 3778
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 3777 AGACAAGCATATGACTACTGGCAG 3754
>seq3754
Length=61660
Score = 82.4 bits (90), Expect = 2e-13
Identities = 59/68 (87%), Gaps = 5/68 (7%)
Strand=Plus/Minus
Query 68 TCGGGATTGGGTAATTTGCGCGCCTGC-----TGCCTTCCTTGGATGTGGTAGCCGTTTC 122
||||||||||||| |||| |||||||| ||||||| ||||||||||| ||||||||
Sbjct 20562 TCGGGATTGGGTAGTTTGTGCGCCTGCCCTGCTGCCTTCTTTGGATGTGGTGGCCGTTTC 20503
Query 123 TCAGGCTC 130
||||||||
Sbjct 20502 TCAGGCTC 20495
>seq3484
Length=19742
Score = 75.2 bits (82), Expect = 3e-11
Identities = 56/64 (88%), Gaps = 5/64 (8%)
Strand=Plus/Minus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135
||||||||||||||||||||| |||| ||||| ||||||| |||||||||||| |||
Sbjct 6612 GGGTAATTTGCGCGCCTGCTG----CCTTAGATGTAGTAGCCG-TTCTCAGGCTCCTTCT 6558
Query 136 CCGG 139
||||
Sbjct 6557 CCGG 6554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510341472000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |