Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq68 284 1e-71
>seq68
Length=8748
Score = 284 bits (314), Expect = 1e-71
Identities = 1223/1897 (64%), Gaps = 86/1897 (5%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
|||||| ||||| || |||| | || ||| |||| | || |||||||| |||||
Sbjct 2375 ATCGACGGTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGT 2434
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|||||| || |||| | |||||||| || | |||| |||| | | || |
Sbjct 2435 CTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACG-TAATCTTGCCCATGGTGGGGT 2493
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || ||| || |||| || || |||||| | | || |||||| || || ||||
Sbjct 2494 CTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCA 2553
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314
| | || || ||| || |||||||| ||||||||||| || | | | | |||
Sbjct 2554 TTTGAACAATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGT-GCCTTGATGTCA 2612
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCA 65372
|||||| | |||| ||||| |||||| | ||| ||||| ||||| || ||
Sbjct 2613 GCTGGAATGTTGGGGATGTTCTGGATTGAACCGC--CGTCAGCAATGATGCGGTTCTTCA 2670
Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGAC 65430
| ||||||||||| |||| |||| ||||| |||| ||| | | || | |||
Sbjct 2671 TGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAG--AAGCCATGGGTTAACGAC 2728
Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490
|||||| || || | | |||||||| |||||||| || ||| ||||| || |
Sbjct 2729 TTGGAATTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACA 2788
Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550
||| | || ||||| || | ||| || |||||||| || || || | |||
Sbjct 2789 CTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACT 2848
Query 65551 GTTTCGCAATCCGT-TCATTTCA---ATGTTGTGACGCAATTCGTCCCAGTTCCACA--T 65604
||| || | |||| | ||| | || | | | || || |||||| ||| | |
Sbjct 2849 GTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTAT----CCCAGTCCCAAAGGT 2904
Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGG 65664
|||| | || ||| ||| ||||||||| | ||| || || | | | ||
Sbjct 2905 CGGTAGGT-GT-GAC-TCC-----CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGG 2956
Query 65665 TGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA-CAGCTGGTCTCGA 65723
||| || | || | || || ||| |||||| |||| | | ||| | || |
Sbjct 2957 TGAGCCTTCGTAAGTCTCATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAA 3016
Query 65724 GTGCGGCAAAATAAATGGTCTCGAAAATG----CGTCGA-----TTAAGTTCACGTGCCT 65774
||| || ||||| |||||||| || ||| || ||| |||| ||| ||
Sbjct 3017 -TGCAGCGTGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACT 3075
Query 65775 CATCGCTCTCGTACG-GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCA 65833
|| | ||| | | | ||| || |||| || || |||||||| || ||
Sbjct 3076 CAAA----TGGTAAACGAAGAGCCA--AG----AAAGCATCAGCAAGACCTTGGACACCG 3125
Query 65834 ATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTG 65893
| | |||| || || ||||| |||||| ||| || || | || |||||||| |||
Sbjct 3126 ACAGCGATAGGCCGGTGACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTG 3185
Query 65894 ATATCGATAATGCGATTCAAATTGCGTGTCACC-ACATGCACGATACGTCGCAATTGTTC 65952
|| || || || ||||| || | || || | || || | || ||| ||
Sbjct 3186 ATGTCAATGATCTTGTTCAAGTTCC-TGACAACGACTTGA--GTAACCTCG----TG--- 3235
Query 65953 GAAATCAAAATGTTTAGGACGATCGGGAGTGCC---GGACA---CCACAAACTTGGGAAG 66006
|| ||| ||| | ||| ||| || | || ||||||| | || ||
Sbjct 3236 --------AAGCTTTTGGAAG-TCGTAAGTTCCCTCGTTCATGTCCACAAATGTTGGGAG 3286
Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066
|||| ||||| ||||| ||| ||| | || || || || | || |||||||||||
Sbjct 3287 AGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAATTTC 3346
Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126
||||||||||| || ||| |||||||| | |||| ||| || ||||| ||||||
Sbjct 3347 TGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATTGCA 3406
Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186
|||||||||||| | |||| | || | |||||||| ||| | ||| | |||| ||
Sbjct 3407 TGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTA 3466
Query 66187 CCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGT 66245
|||||| | || || | || | | || ||||||| || ||| || |
Sbjct 3467 CCAAAGCTTTTGGGCTTTGATGGTTT-TGCGACCTCTACCTTCCTTCTCATAACTCTCAT 3525
Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305
|||| |||||| || || |||| || | || | || || | || |||||||
Sbjct 3526 AGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACA 3585
Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365
|||| | ||| || || | || ||| ||||| |||||| ||||| || ||||| | |
Sbjct 3586 TCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAG 3645
Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425
||||||||||||| || || || || || | ||||| || || || | ||| || |
Sbjct 3646 CGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAA 3705
Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485
|||| || | ||| || ||||| || || |||||||| || || | || ||| |||
Sbjct 3706 ACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGT 3765
Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545
||||| ||||| || || | || ||||||||| || || | ||| || || | |
Sbjct 3766 TTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATAC 3825
Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605
| || || || |||||||| ||| | ||| || || || || || ||||| |
Sbjct 3826 CATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGT 3885
Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAA 66663
| ||||| || |||||||| | || || || |||||| || | | || | |
Sbjct 3886 TGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA--CGTCTTGAGGGTATCGTA 3943
Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTT 66723
|| || || || || |||| ||| | |||| ||||||| |||||| | ||
Sbjct 3944 AATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTG 4003
Query 66724 GGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA 66783
||||| | || ||||| || || || | ||||| || ||||| | ||||| |
Sbjct 4004 TGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATCAA 4063
Query 66784 ATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCAT 66843
||||| ||||| ||| || || || | || || ||||| || | ||| |||||
Sbjct 4064 GTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCAT 4123
Query 66844 CAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTT 66902
| | | ||| || ||||| || || ||| | || | | | ||| || || |
Sbjct 4124 GATCATTTGTTGTGGACGTTC-TGCAACCTTTCCATCGAGTCGAAGAAGGTATGATCGCT 4182
Query 66903 CCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
| |||||||||| || ||||| ||| ||||| ||
Sbjct 4183 CGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTC 4219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397549224230000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |