Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq68 284 1e-71 >seq68 Length=8748 Score = 284 bits (314), Expect = 1e-71 Identities = 1223/1897 (64%), Gaps = 86/1897 (5%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||| || |||| | || ||| |||| | || |||||||| ||||| Sbjct 2375 ATCGACGGTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGT 2434 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| || |||| | |||||||| || | |||| |||| | | || | Sbjct 2435 CTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACG-TAATCTTGCCCATGGTGGGGT 2493 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || ||| || |||| || || |||||| | | || |||||| || || |||| Sbjct 2494 CTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCA 2553 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || || ||| || |||||||| ||||||||||| || | | | | ||| Sbjct 2554 TTTGAACAATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGT-GCCTTGATGTCA 2612 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCA 65372 |||||| | |||| ||||| |||||| | ||| ||||| ||||| || || Sbjct 2613 GCTGGAATGTTGGGGATGTTCTGGATTGAACCGC--CGTCAGCAATGATGCGGTTCTTCA 2670 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGAC 65430 | ||||||||||| |||| |||| ||||| |||| ||| | | || | ||| Sbjct 2671 TGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAG--AAGCCATGGGTTAACGAC 2728 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||| || || | | |||||||| |||||||| || ||| ||||| || | Sbjct 2729 TTGGAATTCCCCTGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACA 2788 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 ||| | || ||||| || | ||| || |||||||| || || || | ||| Sbjct 2789 CTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACT 2848 Query 65551 GTTTCGCAATCCGT-TCATTTCA---ATGTTGTGACGCAATTCGTCCCAGTTCCACA--T 65604 ||| || | |||| | ||| | || | | | || || |||||| ||| | | Sbjct 2849 GTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTAT----CCCAGTCCCAAAGGT 2904 Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGG 65664 |||| | || ||| ||| ||||||||| | ||| || || | | | || Sbjct 2905 CGGTAGGT-GT-GAC-TCC-----CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGG 2956 Query 65665 TGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA-CAGCTGGTCTCGA 65723 ||| || | || | || || ||| |||||| |||| | | ||| | || | Sbjct 2957 TGAGCCTTCGTAAGTCTCATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAA 3016 Query 65724 GTGCGGCAAAATAAATGGTCTCGAAAATG----CGTCGA-----TTAAGTTCACGTGCCT 65774 ||| || ||||| |||||||| || ||| || ||| |||| ||| || Sbjct 3017 -TGCAGCGTGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACT 3075 Query 65775 CATCGCTCTCGTACG-GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCA 65833 || | ||| | | | ||| || |||| || || |||||||| || || Sbjct 3076 CAAA----TGGTAAACGAAGAGCCA--AG----AAAGCATCAGCAAGACCTTGGACACCG 3125 Query 65834 ATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTG 65893 | | |||| || || ||||| |||||| ||| || || | || |||||||| ||| Sbjct 3126 ACAGCGATAGGCCGGTGACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTG 3185 Query 65894 ATATCGATAATGCGATTCAAATTGCGTGTCACC-ACATGCACGATACGTCGCAATTGTTC 65952 || || || || ||||| || | || || | || || | || ||| || Sbjct 3186 ATGTCAATGATCTTGTTCAAGTTCC-TGACAACGACTTGA--GTAACCTCG----TG--- 3235 Query 65953 GAAATCAAAATGTTTAGGACGATCGGGAGTGCC---GGACA---CCACAAACTTGGGAAG 66006 || ||| ||| | ||| ||| || | || ||||||| | || || Sbjct 3236 --------AAGCTTTTGGAAG-TCGTAAGTTCCCTCGTTCATGTCCACAAATGTTGGGAG 3286 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 |||| ||||| ||||| ||| ||| | || || || || | || ||||||||||| Sbjct 3287 AGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAATTTC 3346 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||||||||| || ||| |||||||| | |||| ||| || ||||| |||||| Sbjct 3347 TGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATTGCA 3406 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 |||||||||||| | |||| | || | |||||||| ||| | ||| | |||| || Sbjct 3407 TGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTA 3466 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGT 66245 |||||| | || || | || | | || ||||||| || ||| || | Sbjct 3467 CCAAAGCTTTTGGGCTTTGATGGTTT-TGCGACCTCTACCTTCCTTCTCATAACTCTCAT 3525 Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305 |||| |||||| || || |||| || | || | || || | || ||||||| Sbjct 3526 AGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACA 3585 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 |||| | ||| || || | || ||| ||||| |||||| ||||| || ||||| | | Sbjct 3586 TCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAG 3645 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 ||||||||||||| || || || || || | ||||| || || || | ||| || | Sbjct 3646 CGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAA 3705 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||| || | ||| || ||||| || || |||||||| || || | || ||| ||| Sbjct 3706 ACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGT 3765 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 ||||| ||||| || || | || ||||||||| || || | ||| || || | | Sbjct 3766 TTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATAC 3825 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 | || || || |||||||| ||| | ||| || || || || || ||||| | Sbjct 3826 CATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGT 3885 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAA 66663 | ||||| || |||||||| | || || || |||||| || | | || | | Sbjct 3886 TGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA--CGTCTTGAGGGTATCGTA 3943 Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTT 66723 || || || || || |||| ||| | |||| ||||||| |||||| | || Sbjct 3944 AATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTG 4003 Query 66724 GGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA 66783 ||||| | || ||||| || || || | ||||| || ||||| | ||||| | Sbjct 4004 TGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATCAA 4063 Query 66784 ATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCAT 66843 ||||| ||||| ||| || || || | || || ||||| || | ||| ||||| Sbjct 4064 GTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCAT 4123 Query 66844 CAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTT 66902 | | | ||| || ||||| || || ||| | || | | | ||| || || | Sbjct 4124 GATCATTTGTTGTGGACGTTC-TGCAACCTTTCCATCGAGTCGAAGAAGGTATGATCGCT 4182 Query 66903 CCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | |||||||||| || ||||| ||| ||||| || Sbjct 4183 CGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTC 4219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549224230000