Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_032108.1
Length=589068
Score E
Sequences producing significant alignments: (Bits) Value
seq179 91.5 6e-13
>seq179
Length=59892
Score = 91.5 bits (100), Expect = 6e-13
Identities = 213/316 (67%), Gaps = 4/316 (1%)
Strand=Plus/Minus
Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787
|||| || ||||||| ||| || ||| || | | ||||| || ||||| | ||||
Sbjct 43640 TTGACAATATCGTAATAGATAATCGACATTCCCATAGCTTCTGCCAGAACAGATAGCTGA 43581
Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846
|||||||| | || ||| || | |||||| || || ||||| | | || | |||
Sbjct 43580 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 43521
Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906
||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| ||
Sbjct 43520 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 43462
Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965
| |||| || | | | |||| | ||| ||||| |||| || | |||| ||| |
Sbjct 43461 TGCAAGAACGATAATCTCAGCAATGACTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 43403
Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025
| || || || || ||||| || || | | ||| || | | ||||||| ||
Sbjct 43402 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 43343
Query 13026 CAATGCAGAAGCATCC 13041
||||||| ||||||||
Sbjct 43342 CAATGCAAAAGCATCC 43327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1884846866274841
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |