Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq820 899 0.0 >seq820 Length=10833 Score = 899 bits (996), Expect = 0.0 Identities = 614/686 (90%), Gaps = 4/686 (1%) Strand=Plus/Minus Query 1 TACGTGACCGGTGGCCTA-GC-CGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAA 58 || ||||| || ||||| || | |||||||||| ||||||||||||||||||||||||| Sbjct 6895 TATGTGACTGGGTGCCTACGCTCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAA 6836 Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 6835 TGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAG 6776 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGT 178 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 6775 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGT 6716 Query 179 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCC 238 |||||||||||||||||||||||||||| ||||||||| | | || ||| |||| | Sbjct 6715 GAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCGCCTCGCTGATCATCCGGGCT- 6657 Query 239 TCGGCC-GGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGC 297 || ||| ||||||||| | | | ||||||||||||| | | ||| ||| |||||||||| Sbjct 6656 TCTGCCTGGTGCACTCGGCGGGGCTCAGGCCAGCATCGGTTTGGGTGGTTGGATAAAGGC 6597 Query 298 CCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTG 357 ||||| || ||| |||||||||||||||||||||| |||| |||| ||| |||| Sbjct 6596 TTGGGGAACGTAGCCTCCTTCGGGGGGTGTTATAGCCCCAGGTGCCATGCAGCCTACCTG 6537 Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417 ||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 6536 GACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGA 6477 Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 |||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||| | Sbjct 6476 AACACGGACCAAGGAGTCTAACATTTATGCGAGTGTTTGGGTGTTAAACCCATACGCGGA 6417 Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537 |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| Sbjct 6416 ATGAAAGTGAACGGAGGTAAGAACCCTCAAGGGTGCATTATCGACCGATCCTGATGTCTT 6357 Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597 |||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||| Sbjct 6356 CGGATGGATTTGAGTAAGAGCATAACTGTTGGGACCCGAAAGATGGTGATCTATACGTGA 6297 Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 6296 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCG 6237 Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||| |||||||||||| Sbjct 6236 ATCGTCAAATTTGCGTATAGGGGCGA 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079922565500