Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq379 91.5 4e-16
>seq379
Length=44196
Score = 91.5 bits (100), Expect = 4e-16
Identities = 191/282 (68%), Gaps = 10/282 (4%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||| | | ||||||||
Sbjct 3193 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCANTCATTGAGACAGCNGTTGT 3252
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||||
Sbjct 3253 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 3312
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGC---TTCGCGTT 179
|| | | | || ||||||| || | ||||| ||| |||| ||| | ||
Sbjct 3313 CCCTCAGAGATAAGGCCGCCATTGATCGGGGTTTCCTTCAAATCCAAGCCTATATTAGTC 3372
Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239
| || | || |||||| ||| || |||||| |||||| | |||| | | |
Sbjct 3373 AACTTAGAATATTCGTTAACCAGCCGACATTGGGCAGAAATCACACTCAATACTTTGATT 3432
Query 240 T-TCGTGT--TTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| | | | |||||||||||| |||||| | ||||||||||
Sbjct 3433 TATTATCTTATTGCAGAGTGCTTTGTTTTAATTAAACAGTCG 3474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260754485120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |