Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq820 847 0.0 seq744 181 3e-43 >seq820 Length=10833 Score = 847 bits (938), Expect = 0.0 Identities = 491/504 (97%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 8901 GTACTCATTCCAATTACAAGACTCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 8960 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 8961 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 9020 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 9021 TCTCAGGCTCCTTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 9080 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9081 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCG 9140 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| Sbjct 9141 CAAGGCCATGCGATTCGTTAGGTTATTATGAATCACCAGGGAGCCCCGAAGGGCATTGGT 9200 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 9201 TTTTTATCTAATAAACACACCCCTTCCGAAGTCGAGGTTTTTAGCATGTATTAGCTCTAG 9260 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9261 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 9320 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 9321 GCCATTCGCAGTTTCACAGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCTTTG 9379 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 9380 AGACAAGCATATGACTACTGGCAG 9403 >seq744 Length=730 Score = 181 bits (200), Expect = 3e-43 Identities = 110/115 (96%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTATAG-TTGC 59 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct 60 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGTATATAACTACTAGCAG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510345474560