Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq168 908 0.0 >seq168 Length=51646 Score = 908 bits (1006), Expect = 0.0 Identities = 614/685 (90%), Gaps = 2/685 (0%) Strand=Plus/Minus Query 1 TACGTGACCGGTGGCCTA-GC-CGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAA 58 || ||||| || ||||| || | |||||||||| ||||||||||||||||||||||||| Sbjct 4945 TATGTGACTGGGTGCCTACGCTCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAA 4886 Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 4885 TGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAG 4826 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGT 178 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 4825 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGT 4766 Query 179 GAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCC 238 |||||||||||||||||||||||||||| ||||||||| | | || ||| |||| | Sbjct 4765 GAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCGCCTCGCTGATCATCCGGGCTT 4706 Query 239 TCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCC 298 | ||||||||||| | | | ||||||||||||| | | ||| ||| |||||||||| Sbjct 4705 CTGCCCGGTGCACTCGGCGGGGCTCAGGCCAGCATCGGTTTGGGTGGTTGGATAAAGGCT 4646 Query 299 CCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGG 358 ||||| || ||| |||||||||||||||||||||| || | ||||| |||| ||||| Sbjct 4645 TGGGGAACGTAGCCTCCTTCGGGGGGTGTTATAGCCCCAGGCGCAATGCAGCCCACCTGG 4586 Query 359 ACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGA 418 || |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| | Sbjct 4585 ACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAA 4526 Query 419 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAA 478 ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| || Sbjct 4525 ACACGGACCAAGGAGTCTAACATTTATGCGAGTGTTTGGGTGTCAAACCCATACGCGGAA 4466 Query 479 TGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTC 538 ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| Sbjct 4465 TGAAAGTGAACGGAGGTAAGAACCCTCAAGGGTGCATTATCGACCGATCCTGATGTCTTC 4406 Query 539 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598 ||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||| Sbjct 4405 GGATGGATTTGAGTAAGAGCATAACTGTTGGGACCCGAAAGATGGTGATCTATACGTGAA 4346 Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4345 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGA 4286 Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||| |||||||||||| Sbjct 4285 TCGTCAAATTTGCGTATAGGGGCGA 4261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079922651300