Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq168 295 1e-77 >seq168 Length=51646 Score = 295 bits (326), Expect = 1e-77 Identities = 235/279 (84%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 1815 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 1758 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1757 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1698 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||| | ||||||| || ||||||||||||||||||||||||| ||| ||||| | | Sbjct 1697 GAAAGCGGTGATTTATACCCACACATCGTAGTCGGATACGAATAGGCCTTTGGCCCTGCA 1638 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||| || ||||||| | | |||| | | | | | ||||| || |||| Sbjct 1637 TCTTAGCTGGTTGGCAACGATCTCATGGGGGAACACCCGTGGGATTAGCTGACGTCTTGC 1578 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||||||||||| ||| ||||||||||||| ||||| Sbjct 1577 AATTTCACCATGCGTGGGGTTAAATCCTTTGCATACGAC 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819171382784