Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 251 6e-62
seq3071 109 4e-19
>seq1816
Length=7458
Score = 251 bits (278), Expect = 6e-62
Identities = 663/1000 (66%), Gaps = 24/1000 (2%)
Strand=Plus/Minus
Query 65806 AAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865
||||| ||||| ||||||||||| || | | |||| || |||||||| ||||||
Sbjct 6012 AAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTT 5953
Query 65866 TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925
||| ||||| || || |||||||| ||||| || || || ||||| || | || ||
Sbjct 5952 TCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTC-TGACAA 5894
Query 65926 C-ACATGCACGATACGTCGCAAT--TGTTCGAAATCAAAATGTTTAGGACGATCGGGAGT 65982
| || || | || ||| | | || |||||| || ||| | || |
Sbjct 5893 CGACTTGA--GTAACCTCGTGAAGCTTTTGGAAATCGTAA-GTT-----CCCTCATTCAT 5842
Query 65983 GCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042
| | |||||| | || || |||| || || | ||| ||| ||| | || ||
Sbjct 5841 GTC------CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATC 5788
Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102
|| || | || ||||||||||| ||||||| ||| || ||| |||||||| | ||
Sbjct 5787 TGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTT 5728
Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162
|| ||| || ||||| ||||||||||||||||| | |||| | ||| | ||||||||
Sbjct 5727 CTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTC 5668
Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-C 66221
| ||| | ||| | |||| || |||||| | || || | || | | | || |
Sbjct 5667 AGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT-CTTGCGACCTC 5609
Query 66222 TACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281
|||||| || ||| || ||||| ||| || || || |||| || | ||
Sbjct 5608 TACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA 5549
Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341
| ||||| | | || ||||| || | |||||| | | || ||| ||||| ||
Sbjct 5548 ACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCA 5489
Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401
| || ||||| || ||||| | ||| ||||| ||||| || || || || || |||
Sbjct 5488 TGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGC 5429
Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461
|||| || || || | ||| |||||||| || | || || ||||| || || || ||||
Sbjct 5428 CGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGA 5369
Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521
|| || | || ||| ||| ||||||||||||||||| | ||| || ||||
Sbjct 5368 CTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGA 5309
Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581
| || || | ||||||||||| ||||| || || || ||||| ||| ||||| | |
Sbjct 5308 AAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCAC 5249
Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641
| || || || ||||| || ||||||||||| || || | || ||||| ||
Sbjct 5248 CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAG 5189
Query 66642 CACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699
|||| || | | || |||| || ||||| || |||| || | |||
Sbjct 5188 CACATGTCTTGAGGGTATCATAAATA--CCATCAATACTATCCTCCTTCATATCAATGAG 5131
Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759
| ||||||| ||| || | || ||||| | || ||||| || || || | |||||
Sbjct 5130 GAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 5071
Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799
|| ||||| | | ||||| ||||| ||||| |||
Sbjct 5070 TGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATG 5031
Score = 107 bits (118), Expect = 2e-18
Identities = 314/475 (66%), Gaps = 8/475 (2%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
|||||| |||||||| || | | || ||| |||| | || |||||||| |||||
Sbjct 6735 ATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGT 6676
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|||||| || |||| | ||||||||| || | |||| |||| | | | || |
Sbjct 6675 CTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAG-TAATCTTGCCCATTGTGGGGT 6617
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || |||| || || ||| || | | ||||||||| || ||||
Sbjct 6616 CTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCA 6557
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTCA 65314
| | || || ||| || |||||||||||||||||||| || || | | |||
Sbjct 6556 TTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTG-ATGTCA 6498
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374
|||||| | ||||| || | ||||||| | || || || || || |||
Sbjct 6497 GCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATG 6438
Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGATGACTT 65432
|||||||| || |||| |||| ||||| |||| | || | | || | ||||
Sbjct 6437 TTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGC--AGCCATGGGTTAACAACTT 6380
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
|||| || || | || |||||||| |||||||| || ||| ||||||||| | |
Sbjct 6379 GGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACT 6320
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
| || || |||||||| | || || |||||||| ||||| || | |||
Sbjct 6319 CGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAA 6265
>seq3071
Length=13184
Score = 109 bits (120), Expect = 4e-19
Identities = 227/334 (68%), Gaps = 7/334 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||||||||| || || || |||||||| | || ||| |||| |||
Sbjct 6286 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 6227
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203
|| || ||| | | || ||| | | | | ||| | | |||||||
Sbjct 6226 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 6167
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| || | || ||||| || || || ||||| || ||||| ||||| | | || ||
Sbjct 6166 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 6107
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| || || ||| | | ||||| ||||| |||||||| ||||| ||| |||
Sbjct 6106 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 6047
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
||||| ||||||| || | ||| | | ||||||||||| ||||| | ||| | ||
Sbjct 6046 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAAGCC 5987
Query 61384 GAACGTGAAC-GAT-TGTTCAATGCCATCGAGAC 61415
||| |||| || | |||||||| || |||||
Sbjct 5986 CAAC--GAACATATCTCTTCAATGCAATTGAGAC 5955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397550527631840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |