Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1816 251 6e-62 seq3071 109 4e-19 >seq1816 Length=7458 Score = 251 bits (278), Expect = 6e-62 Identities = 663/1000 (66%), Gaps = 24/1000 (2%) Strand=Plus/Minus Query 65806 AAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865 ||||| ||||| ||||||||||| || | | |||| || |||||||| |||||| Sbjct 6012 AAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTT 5953 Query 65866 TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925 ||| ||||| || || |||||||| ||||| || || || ||||| || | || || Sbjct 5952 TCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTC-TGACAA 5894 Query 65926 C-ACATGCACGATACGTCGCAAT--TGTTCGAAATCAAAATGTTTAGGACGATCGGGAGT 65982 | || || | || ||| | | || |||||| || ||| | || | Sbjct 5893 CGACTTGA--GTAACCTCGTGAAGCTTTTGGAAATCGTAA-GTT-----CCCTCATTCAT 5842 Query 65983 GCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042 | | |||||| | || || |||| || || | ||| ||| ||| | || || Sbjct 5841 GTC------CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATC 5788 Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102 || || | || ||||||||||| ||||||| ||| || ||| |||||||| | || Sbjct 5787 TGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTT 5728 Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || ||| || ||||| ||||||||||||||||| | |||| | ||| | |||||||| Sbjct 5727 CTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTC 5668 Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-C 66221 | ||| | ||| | |||| || |||||| | || || | || | | | || | Sbjct 5667 AGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT-CTTGCGACCTC 5609 Query 66222 TACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281 |||||| || ||| || ||||| ||| || || || |||| || | || Sbjct 5608 TACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA 5549 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 | ||||| | | || ||||| || | |||||| | | || ||| ||||| || Sbjct 5548 ACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCA 5489 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || ||||| || ||||| | ||| ||||| ||||| || || || || || ||| Sbjct 5488 TGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGC 5429 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 |||| || || || | ||| |||||||| || | || || ||||| || || || |||| Sbjct 5428 CGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGA 5369 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 || || | || ||| ||| ||||||||||||||||| | ||| || |||| Sbjct 5368 CTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGA 5309 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581 | || || | ||||||||||| ||||| || || || ||||| ||| ||||| | | Sbjct 5308 AAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCAC 5249 Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 | || || || ||||| || ||||||||||| || || | || ||||| || Sbjct 5248 CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAG 5189 Query 66642 CACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 |||| || | | || |||| || ||||| || |||| || | ||| Sbjct 5188 CACATGTCTTGAGGGTATCATAAATA--CCATCAATACTATCCTCCTTCATATCAATGAG 5131 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | ||||||| ||| || | || ||||| | || ||||| || || || | ||||| Sbjct 5130 GAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 5071 Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 || ||||| | | ||||| ||||| ||||| ||| Sbjct 5070 TGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATG 5031 Score = 107 bits (118), Expect = 2e-18 Identities = 314/475 (66%), Gaps = 8/475 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| |||||||| || | | || ||| |||| | || |||||||| ||||| Sbjct 6735 ATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGT 6676 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| || |||| | ||||||||| || | |||| |||| | | | || | Sbjct 6675 CTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAG-TAATCTTGCCCATTGTGGGGT 6617 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| || || ||| || | | ||||||||| || |||| Sbjct 6616 CTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCA 6557 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTCA 65314 | | || || ||| || |||||||||||||||||||| || || | | ||| Sbjct 6556 TTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTG-ATGTCA 6498 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 |||||| | ||||| || | ||||||| | || || || || || ||| Sbjct 6497 GCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATG 6438 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGATGACTT 65432 |||||||| || |||| |||| ||||| |||| | || | | || | |||| Sbjct 6437 TTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGC--AGCCATGGGTTAACAACTT 6380 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||| || || | || |||||||| |||||||| || ||| ||||||||| | | Sbjct 6379 GGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACT 6320 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | || || |||||||| | || || |||||||| ||||| || | ||| Sbjct 6319 CGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAA 6265 >seq3071 Length=13184 Score = 109 bits (120), Expect = 4e-19 Identities = 227/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || || || |||||||| | || ||| |||| ||| Sbjct 6286 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 6227 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203 || || ||| | | || ||| | | | | ||| | | ||||||| Sbjct 6226 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 6167 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || ||||| || || || ||||| || ||||| ||||| | | || || Sbjct 6166 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 6107 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || || ||| | | ||||| ||||| |||||||| ||||| ||| ||| Sbjct 6106 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 6047 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| ||||||| || | ||| | | ||||||||||| ||||| | ||| | || Sbjct 6046 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAAGCC 5987 Query 61384 GAACGTGAAC-GAT-TGTTCAATGCCATCGAGAC 61415 ||| |||| || | |||||||| || ||||| Sbjct 5986 CAAC--GAACATATCTCTTCAATGCAATTGAGAC 5955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550527631840