Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1315 277 3e-72 seq659 248 1e-63 >seq1315 Length=9151 Score = 277 bits (306), Expect = 3e-72 Identities = 201/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 6184 GTACAAAAGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGCATT-C 6241 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 6242 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 6301 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||| ||| |||||||| | ||||||||||||||||||| Sbjct 6302 ACCCAGACCTTTCGGTCAAGGAGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 6361 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6362 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 6410 >seq659 Length=65873 Score = 248 bits (274), Expect = 1e-63 Identities = 194/228 (85%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||| |||||||||||| ||||||| |||| ||||||| |||||||||||| ||| || Sbjct 245 TACAAAAGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGCATT-CC 188 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 |||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||| Sbjct 187 TCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAATAAGATTA 128 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| ||||| || | || || ||| |||||||| | | ||||||||| |||||||| Sbjct 127 CCCAGACCTTTCTGTCACGGAGATGAACTCGTTGTCTCTGTAAGTGTAGCGAGCGTGCGG 68 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 67 CCCAGAACATCTAAGGGCATCAAAGACCTGTTATTGCATCAAACTTCC 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751965112135