Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 361 9e-98
seq659 125 1e-26
>seq1315
Length=9151
Score = 361 bits (400), Expect = 9e-98
Identities = 235/257 (91%), Gaps = 1/257 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6329 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 6388
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 6389 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 6447
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|||| ||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6448 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 6507
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 6508 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 6567
Query 242 AGAGCTATCAATCTGTC 258
|||||| ||||||||||
Sbjct 6568 AGAGCTCTCAATCTGTC 6584
>seq659
Length=65873
Score = 125 bits (138), Expect = 1e-26
Identities = 91/103 (88%), Gaps = 3/103 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||| || ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 101 ACTCGTTGTCTCTGTAAGTGTAGCGAGCGTGCGGCCCAGAACATCTAAGGGCATCAAAGA 42
Query 62 CCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAATAGT 103
||||||||||| |||||||||||| ||||| |||| |||||
Sbjct 41 CCTGTTATTGCATCAAACTTCCATCGGGCTG--AGCCGATAGT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796763033709
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |