Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 251 6e-62
seq1268 109 4e-19
>seq4565
Length=7484
Score = 251 bits (278), Expect = 6e-62
Identities = 663/1000 (66%), Gaps = 24/1000 (2%)
Strand=Plus/Minus
Query 65806 AAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865
||||| ||||| ||||||||||| || | | |||| || |||||||| ||||||
Sbjct 6018 AAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTT 5959
Query 65866 TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925
||| ||||| || || |||||||| ||||| || || || ||||| || | || ||
Sbjct 5958 TCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTC-TGACAA 5900
Query 65926 C-ACATGCACGATACGTCGCAAT--TGTTCGAAATCAAAATGTTTAGGACGATCGGGAGT 65982
| || || | || ||| | | || |||||| || ||| | || |
Sbjct 5899 CGACTTGA--GTAACCTCGTGAAGCTTTTGGAAATCGTAA-GTT-----CCCTCATTCAT 5848
Query 65983 GCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042
| | |||||| | || || |||| || || | ||| ||| ||| | || ||
Sbjct 5847 GTC------CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATC 5794
Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102
|| || | || ||||||||||| ||||||| ||| || ||| |||||||| | ||
Sbjct 5793 TGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTT 5734
Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162
|| ||| || ||||| ||||||||||||||||| | |||| | ||| | ||||||||
Sbjct 5733 CTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTC 5674
Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-C 66221
| ||| | ||| | |||| || |||||| | || || | || | | | || |
Sbjct 5673 AGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT-CTTGCGACCTC 5615
Query 66222 TACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281
|||||| || ||| || ||||| ||| || || || |||| || | ||
Sbjct 5614 TACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA 5555
Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341
| ||||| | | || ||||| || | |||||| | | || ||| ||||| ||
Sbjct 5554 ACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCA 5495
Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401
| || ||||| || ||||| | ||| ||||| ||||| || || || || || |||
Sbjct 5494 TGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGC 5435
Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461
|||| || || || | ||| |||||||| || | || || ||||| || || || ||||
Sbjct 5434 CGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGA 5375
Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521
|| || | || ||| ||| ||||||||||||||||| | ||| || ||||
Sbjct 5374 CTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGA 5315
Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581
| || || | ||||||||||| ||||| || || || ||||| ||| ||||| | |
Sbjct 5314 AAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCAC 5255
Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641
| || || || ||||| || ||||||||||| || || | || ||||| ||
Sbjct 5254 CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAG 5195
Query 66642 CACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699
|||| || | | || |||| || ||||| || |||| || | |||
Sbjct 5194 CACATGTCTTGAGGGTATCATAAATA--CCATCAATACTATCCTCCTTCATATCAATGAG 5137
Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759
| ||||||| ||| || | || ||||| | || ||||| || || || | |||||
Sbjct 5136 GAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 5077
Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799
|| ||||| | | ||||| ||||| ||||| |||
Sbjct 5076 TGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATG 5037
Score = 107 bits (118), Expect = 2e-18
Identities = 314/475 (66%), Gaps = 8/475 (2%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
|||||| |||||||| || | | || ||| |||| | || |||||||| |||||
Sbjct 6741 ATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGT 6682
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|||||| || |||| | ||||||||| || | |||| |||| | | | || |
Sbjct 6681 CTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAG-TAATCTTGCCCATTGTGGGGT 6623
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || |||| || || ||| || | | ||||||||| || ||||
Sbjct 6622 CTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCA 6563
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCTCA 65314
| | || || ||| || |||||||||||||||||||| || || | | |||
Sbjct 6562 TTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTG-ATGTCA 6504
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374
|||||| | ||||| || | ||||||| | || || || || || |||
Sbjct 6503 GCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATG 6444
Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGATGACTT 65432
|||||||| || |||| |||| ||||| |||| | || | | || | ||||
Sbjct 6443 TTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGC--AGCCATGGGTTAACAACTT 6386
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
|||| || || | || |||||||| |||||||| || ||| ||||||||| | |
Sbjct 6385 GGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACT 6326
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
| || || |||||||| | || || |||||||| ||||| || | |||
Sbjct 6325 CGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAA 6271
>seq1268
Length=12646
Score = 109 bits (120), Expect = 4e-19
Identities = 227/334 (68%), Gaps = 7/334 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||||||||| || || || |||||||| | || ||| |||| |||
Sbjct 6539 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 6598
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203
|| || ||| | | || ||| | | | | ||| | | |||||||
Sbjct 6599 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 6658
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| || | || ||||| || || || ||||| || ||||| ||||| | | || ||
Sbjct 6659 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 6718
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
||| || || ||| | | ||||| ||||| |||||||| ||||| ||| |||
Sbjct 6719 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 6778
Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383
||||| ||||||| || | ||| | | ||||||||||| ||||| | ||| | ||
Sbjct 6779 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAAGCC 6838
Query 61384 GAACGTGAAC-GAT-TGTTCAATGCCATCGAGAC 61415
||| |||| || | |||||||| || |||||
Sbjct 6839 CAAC--GAACATATCTCTTCAATGCAATTGAGAC 6870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397544795570960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |