Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq4273 87.8 7e-12 >seq4273 Length=3101 Score = 87.8 bits (96), Expect = 7e-12 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787 |||| || ||||||| ||| || ||| || | | ||||| || ||||| | |||| Sbjct 1079 TTGACAATATCGTAATAGATAATCGACATTCCCATAGCTTCTGCCAGAACAGATAGCTGA 1020 Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCA-ACC 12846 |||||||| | || ||| || | |||||| || || ||||| | | || | ||| Sbjct 1019 GAACCAATATGACTATATCCAATTATACCCAGAGTTTTTCCGCGGATCTCCCAGCACTTG 960 Query 12847 TTGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACG 12906 ||| || ||||||||||| || | ||||| ||| | || ||| |||| ||| || Sbjct 959 TTGCCAA-CCTTGTTCCAAACCCCATTGTGTAATTCAGTTGATCGATCCCCAAGCTGGCG 901 Query 12907 AGAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTG-TTGCAAAAGG 12965 | |||| || | | | ||| | ||| ||||| |||| || | |||| ||| | Sbjct 900 TGCAAGAACGATAATCTCAGCAATGGCTAACTCGGCCACACTTCGAGAGTTTGCGAAA-G 842 Query 12966 GAGAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAAC 13025 | || || || || ||||| || || | | ||| || | | ||||||| || Sbjct 841 GCGAGTTGAAAACAGCAATTCCGTGTCTAGCAGCATACTCCAAGTCTACCTGATTTGTAC 782 Query 13026 CAATGCAGAAGCATCC 13041 ||||||| |||||||| Sbjct 781 CAATGCAAAAGCATCC 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884782820191077