Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20 365 4e-96 seq27 156 3e-33 >seq20 Length=946066 Score = 365 bits (404), Expect = 4e-96 Identities = 1224/1880 (65%), Gaps = 50/1880 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||| || || | || ||| ||| | || | ||||||||||||||||| Sbjct 120253 ATCGACGGTGAATTGAATGGGTGCAGAAGCAGCCATAGTACGGAGATAGTACATGCCGGT 120312 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || || ||||| || | | || || | | | || | Sbjct 120313 CTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAG-TGATCTTACCCATGGTGGGTT 120371 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || ||||| ||||| ||| || ||| || |||||| || || |||| Sbjct 120372 CCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATGAAAGCACCACGGTCAGCGGCCA 120431 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | | |||||| || || ||||||||||| |||||||| ||| ||| Sbjct 120432 TCTGGATGATAGTGCGCTGAGAGATCTCCCAGACAGTCTTGTAGAGGTTTTTGGTCTCTT 120491 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 || || | ||| ||| | || || | ||||| ||||| || ||| Sbjct 120492 CAGGGATGTTGGGAATTCGCTGAATCGAGCCGCCCTCAGCAATGATGCGGTTCTTCATGT 120551 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTTG 65433 ||| ||||| | ||||| |||| || | |||| | || | | |||| ||||| Sbjct 120552 TCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAGC--AGCCATGGGTTGACCACTTG 120609 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 |||||| |||| || ||||| || |||||||| || ||| || |||||| |||| Sbjct 120610 GAACTCTCCGGCAAGCACACGGCGAGAGTAGATGTTCGATGTGTATGGCTCAAAGCATTC 120669 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| |||||||| | || || ||||| |||||||| || || | | ||||| Sbjct 120670 GTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGGCATGGGTGCAACGAGTAGGGAGTT 120729 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTA 65611 || | || | | |||| || | |||| |||||| ||| | || || Sbjct 120730 GCGGACGCCATGCTGGGCAATCTTCTCCTTCAATGAAGCCCAGTCCCAGAGATCAGTGGG 120789 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACTGGCCGGTGA 65667 | || |||| || || | ||| | || || || |||||||| ||| Sbjct 120790 T-GT-GACACCC------CAGAGATCGTACTGGAGCTGGCCCTGAGATACTGG----TGA 120837 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAA-GTTGACAGCTGGTCTCGAGTG 65726 ||| || | | |||||| || ||| ||||||| || | || || | ||| | Sbjct 120838 ACCTTGGTATGTCTCGTACGGGCCAAGCTCTTTGGCAATGTCGCAAGATGAAGT-GAGAG 120896 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | || |||||||| ||||| || | || || | |||||| | ||| Sbjct 120897 CAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGCTTCTTTGCCTCGGCTGACTCAA 120956 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | |||| | || || |||| || || |||||||| || |||| ||| ||||| | Sbjct 120957 AGGGCAGTCTCAAAGCGAGGAAAGCATCAGCAAGACCTTGTACACCAAGACCAATGGGCC 121016 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 ||||| || || || | ||||| ||||| |||| |||| || || || Sbjct 121017 TGTGACGGAAGTTACTGCGGCGTGCCTCCTCAACAGGATAGTGGTTGACCTCAATGATCT 121076 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGT 65965 ||| | |||||| || || || || || | | | | | || | ||| || || | Sbjct 121077 TATTGAGATTGCGAGTGACAACCTGAGTGACTTCAT-GAAGTTTCTGGAAGTCGAACTCG 121135 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 | | || ||| || | ||| ||| || | | ||||| || |||||| Sbjct 121136 CCACGCTTAT----AGT------CAACG-AAAGATGGCAAAG-CGAGAGAGGCAAGGTTG 121183 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 |||||||| | ||| || ||||| |||||||| | ||| || ||||| || ||| | | Sbjct 121184 CAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAGGTTAGAACTG 121243 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 || ||||| || | |||| || || ||||| | ||||| ||||||||||| | |||| Sbjct 121244 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTATAGCATG 121303 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 | || | || || ||| || | ||| | ||||| | ||| || | || Sbjct 121304 AAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAGCTTCTGAGCACGA 121363 Query 66206 ACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || || | | ||| | || | ||| |||||| | | |||||| | ||| || || Sbjct 121364 ACAGT-CTCGCGGCCACGGCCCTCGCGCTCGTAACGATGGTAGAGCTCTTCAAACTCATC 121422 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 || | || || | || | || || || || || | || | ||| ||||| | Sbjct 121423 GCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATTCACCGTT 121482 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 || | ||||| ||| || ||||| || ||||||||||| |||||||||||||| || Sbjct 121483 CTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGAAGAGATCGCGGGC 121542 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || || || |||||||||| ||||||| ||| ||||| |||||| || ||||| Sbjct 121543 ACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAGACATCAGCATG 121602 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 |||||| || ||||||||||| || | ||| || ||| |||||| || ||||| || Sbjct 121603 CCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTTGTTGCCACCCTGATCGACATA 121662 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 ||||| |||||| | ||||| | ||| || | ||| ||||| || | ||||| || Sbjct 121663 ACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGAAGTACCATTAGT 121722 Query 66565 GCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 ||| ||||| || || || || || || ||||| ||||||||||| || || Sbjct 121723 GCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGCACATTGAGACCAATACCGCCAGC 121782 Query 66625 CGTCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTC 66681 ||||| |||||| ||||| || | | ||| | | || || |||||| ||| Sbjct 121783 AGTCTTGGAGATGAGTGCACA---GGTCTTAAGTGTGTCGTAAATACCCTCAATGCTGTC 121839 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 |||| ||| | ||| |||| || | || || |||||| | || ||| Sbjct 121840 TTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCCTGCGTTGAA 121899 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 ||| ||||| | |||||| || ||||| | | |||||||| | ||| || || || | Sbjct 121900 GAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACATGTAGTCGTATGTTTCAATCGC 121959 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCG 66861 ||||||| ||| ||||| || || | ||| |||||||| | | ||| || || Sbjct 121960 CTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCAGCATATGTTGTGGTCG 122019 Query 66862 TTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920 || | || || || ||||| | | | ||| || ||||| |||||||||| ||||| Sbjct 122020 CTC-AGCAACCTTGCCGTTGATGCGGAGGAGGTATGAACGTTCAAGGGTCTTGAAACCAA 122078 Query 66921 AGTACGAGTAATTGAAATCG 66940 || || ||| ||||||||| Sbjct 122079 AGAACTGGTAGTTGAAATCG 122098 >seq27 Length=812739 Score = 156 bits (172), Expect = 3e-33 Identities = 288/422 (68%), Gaps = 3/422 (1%) Strand=Plus/Minus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 ||||||||| | || |||||||| || ||||| | ||||||||| | ||||| ||||| Sbjct 400839 GTCGAGGGTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTTTGGCTCAAGAAGCGTGGC 400780 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || |||||||||||||||||| ||| ||| | || || || || ||||||||||| || Sbjct 400779 CTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACTGC 400720 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 || |||||| ||||| ||| || | || || || || |||| || Sbjct 400719 GACTTTGCTTGCTTGCTCTTCTCACTC---CTCAACAACCGCCCCAGCAAGGATGCCGTC 400663 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | || | |||||| || ||||| ||||| || || || || ||| | ||| Sbjct 400662 AAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCCC 400603 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | || | |||||||| || |||| ||||| ||||| ||||| || ||| Sbjct 400602 TGTGCTCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGAC 400543 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 |||||| | | | | | || | | | | || || | | |||||| || || ||| Sbjct 400542 CGTCTGCTCTTGGCTCTTGGCAACACCAAGGTATACAACTCCACAAACCCCTTCGACTTC 400483 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | || ||||| | ||||||||| || || || ||||| ||||| || ||||| Sbjct 400482 ATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTAC 400423 Query 61930 CA 61931 || Sbjct 400422 CA 400421 Score = 114 bits (126), Expect = 1e-20 Identities = 223/322 (69%), Gaps = 13/322 (4%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||| ||||||||||||||||| | || ||| | ||| | ||||| || | Sbjct 401302 TACAAGAAGGCCGAAGCTTCCTTCTGGACCGCAGAAGAGATTGATCTCTCCAAGGATCTT 401243 Query 61159 AATGACTGGGA---GCGTTTATCGAGCGGTGAACAACATTTCATTAAA---CATGTGTTG 61212 | |||||| | ||| | || | ||| | | ||| | | || || | Sbjct 401242 CACGACTGGAACAAGCGCCT---GAATGATGACGAGCGCTTCTTCATCTCCCACGTCCTC 401186 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| || || || || || || ||||| ||||| | | || || ||| | ||| Sbjct 401185 GCTTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGATTCTC-CAG 401127 Query 61273 -GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 ||||| ||| | | || || || || ||||||||||||||||| |||||||| | Sbjct 401126 CGAGGTCCAAATACCCGAAGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 401067 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 ||||||||| | ||| | | |||||||| || || ||||| |||| | |||| | Sbjct 401066 CCACTCGGAAACCTACTCTCTCCTCATCGACACCTATATCAGCGAGCCTAAGCAACGC-A 401008 Query 61392 ACGA-TTGTTCAATGCCATCGA 61412 || | |||||||||||||| || Sbjct 401007 ACTACTTGTTCAATGCCATTGA 400986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566604536320