Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03-
01] 76 sequences; 29,468,565 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq53 311 7e-80
seq18 264 9e-66
>seq53
Length=159929
Score = 311 bits (344), Expect = 7e-80
Identities = 653/961 (68%), Gaps = 28/961 (3%)
Strand=Plus/Plus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
|||||| || || || || || || |||||||| || || | ||| || || ||
Sbjct 98637 ACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCCGGCGCACAG 98696
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
||||||| ||| || |||||||| || || ||| |||||||||| |||| || ||
Sbjct 98697 TACTCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 98756
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172
|||||||| ||||| |||||||||| |||| |||| |||| ||||| || | |
Sbjct 98757 CTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCC 98816
Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT---ACGTACCGC--CCTACCTT 66227
|| | ||||||| ||| || | ||||| | || ||| ||||| || |||
Sbjct 98817 TCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGAGGCACG-ACCGCGGCCCTCCT- 98874
Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287
| ||||| | |||||| || || || || || | |||| ||| | |
Sbjct 98875 ---GCTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 98931
Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347
| |||| || || |||||||| | ||| ||| | | || || ||||| ||| || |
Sbjct 98932 GGCACTCGTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAACA 98991
Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407
| ||||| ||||| || || ||| ||||| || || || ||| || ||||||| |
Sbjct 98992 GGTCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACCTCTTCCTTGCCGTGGT 99051
Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467
| ||||||| ||| ||||||||||| | ||||| ||||| || |||||||| ||||| |
Sbjct 99052 TCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAA 99111
Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527
| | || || ||| |||||| |||||||||||||| || ||||| || ||||
Sbjct 99112 AGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACAC 99171
Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT- 66586
||| ||| || | || ||||| || | || ||||||||| | ||| || || |||
Sbjct 99172 GCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCC-CGTG 99230
Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646
|| || || ||| ||||| ||||| |||||||| ||| |||| ||||| ||||||
Sbjct 99231 GCGCGGATGCGGTGGACATTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACA- 99289
Query 66647 TCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAG 66703
|| | | || | | ||||| ||||| ||||| |||| ||| | ||| ||
Sbjct 99290 --GGTCTTGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAG 99347
Query 66704 CATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTA 66763
|| || || |||| | ||| || | || ||| || ||||| | || || ||
Sbjct 99348 CAAGACGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTG 99407
Query 66764 AAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGA 66823
||| | | || |||||| ||||||||||| ||||| ||| | | |||||
Sbjct 99408 AAGAACTTGCTCGACATGAGGTTGTACGTCTCAATGACGCGATCGACTCTGTCGCCCCAG 99467
Query 66824 ATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCT 66878
|| || | | |||| ||||| | | || || || || ||||| | |||| |||
Sbjct 99468 ATGCCAACAGCCACA-CGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCG-TCC- 99524
Query 66879 TGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAAT 66938
| | || | ||| ||||| ||||||||||||| ||||||||| ||| ||||| |
Sbjct 99525 --AGCTTCAACAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGT 99582
Query 66939 C 66939
|
Sbjct 99583 C 99583
>seq18
Length=597235
Score = 264 bits (292), Expect = 9e-66
Identities = 578/852 (68%), Gaps = 14/852 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || ||||||||||||| |||||| | ||| ||
Sbjct 244919 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATTGATCTG 244860
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202
||||| || | | |||||| | || | | | || | ||| | | |||||
Sbjct 244859 TCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAG-GACGAAAAGTACTTCATCTC 244801
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| || | || ||||||||||| || || || || ||||| ||||| | | || ||
Sbjct 244800 GCACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATTGTCAACGAGAACCTGGTTGAGCG 244741
Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| | ||||| || | | ||||| || || ||||||||||||||||| ||
Sbjct 244740 CTTCTCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 244681
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382
|||||| ||||||| |||| |||| | |||||||| |||||||||| ||||| ||
Sbjct 244680 GGAGAACATCCACTCCGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGAGCCCGC 244621
Query 61383 GGAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441
| || | | | ||||||| |||||||| || || || | || || || |
Sbjct 244620 CCAGCG-CAGCTACCTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGCCG 244562
Query 61442 ATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500
| |||||| |||| ||||| || | || | | | || |||| | || || ||||
Sbjct 244561 ACTGGGCCCTCAAGTGGATTGCCGACCACGA-GTCGACCTTTGCCCAGCGCCTGGTGGCC 244503
Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560
||||| | |||||||| | || ||| || | |||||| | || || ||| ||
Sbjct 244502 TTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCGC 244443
Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620
|| ||||| || |||||||| |||||||| ||| ||| |||| || ||||||||||||
Sbjct 244442 AAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGC 244383
Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680
|||| || ||||| |||| ||| ||| | ||| || || || ||
Sbjct 244382 CTGCACACCGACTTTGCCTGCCTGCTCTTC--TCGC-ACCTGAACAACCGCCCCAGCAAG 244326
Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740
||| | | || || | ||| || || || || |||| || ||||||||
Sbjct 244325 AAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAG 244266
Query 61741 GCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTT 61800
|| ||||| | | || |||||||||| | || ||| |||||| ||||| |||
Sbjct 244265 GCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTT 244206
Query 61801 GTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859
|| |||||||||||| |||| | | || | ||| || |||| | | |||||
Sbjct 244205 GTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAAGG-TCTACCGCTCCACGAACCC 244147
Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919
||||| || ||||| | || ||||| | ||||||||| || || || ||||| |||||
Sbjct 244146 CTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGT 244087
Query 61920 AGGCGACTATCA 61931
|||||||| ||
Sbjct 244086 TGGCGACTACCA 244075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567631752640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |