Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599055.1_202016-03- 01] 76 sequences; 29,468,565 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq53 311 7e-80 seq18 264 9e-66 >seq53 Length=159929 Score = 311 bits (344), Expect = 7e-80 Identities = 653/961 (68%), Gaps = 28/961 (3%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||| || || || || || || |||||||| || || | ||| || || || Sbjct 98637 ACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCCGGCGCACAG 98696 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| ||| || |||||||| || || ||| |||||||||| |||| || || Sbjct 98697 TACTCGATAATCTCCGTGCACAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 98756 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||||| ||||| |||||||||| |||| |||| |||| ||||| || | | Sbjct 98757 CTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCGGTCTGCGCC 98816 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT---ACGTACCGC--CCTACCTT 66227 || | ||||||| ||| || | ||||| | || ||| ||||| || ||| Sbjct 98817 TCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGAGGCACG-ACCGCGGCCCTCCT- 98874 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287 | ||||| | |||||| || || || || || | |||| ||| | | Sbjct 98875 ---GCTCGTACTTTTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 98931 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 | |||| || || |||||||| | ||| ||| | | || || ||||| ||| || | Sbjct 98932 GGCACTCGTTGGGGCACATCAGAGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAACA 98991 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 | ||||| ||||| || || ||| ||||| || || || ||| || ||||||| | Sbjct 98992 GGTCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCGCGAACCTCTTCCTTGCCGTGGT 99051 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | ||||||| ||| ||||||||||| | ||||| ||||| || |||||||| ||||| | Sbjct 99052 TCTTGCGCAGGTCAAGGAACTCAAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAA 99111 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 | | || || ||| |||||| |||||||||||||| || ||||| || |||| Sbjct 99112 AGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAACACAC 99171 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT- 66586 ||| ||| || | || ||||| || | || ||||||||| | ||| || || ||| Sbjct 99172 GCAGCATGGGAATGATGCCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCC-CGTG 99230 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || || || ||| ||||| ||||| |||||||| ||| |||| ||||| |||||| Sbjct 99231 GCGCGGATGCGGTGGACATTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACA- 99289 Query 66647 TCGGCC---ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAG 66703 || | | || | | ||||| ||||| ||||| |||| ||| | ||| || Sbjct 99290 --GGTCTTGAGGGTATCGTAAATGCCCTCAATCGAGTCCTCCTTCATGTCGACCAGGAAG 99347 Query 66704 CATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTA 66763 || || || |||| | ||| || | || ||| || ||||| | || || || Sbjct 99348 CAAGACGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGCGTGGGCGAGGCATGGGTG 99407 Query 66764 AAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGA 66823 ||| | | || |||||| ||||||||||| ||||| ||| | | ||||| Sbjct 99408 AAGAACTTGCTCGACATGAGGTTGTACGTCTCAATGACGCGATCGACTCTGTCGCCCCAG 99467 Query 66824 ATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCT 66878 || || | | |||| ||||| | | || || || || ||||| | |||| ||| Sbjct 99468 ATGCCAACAGCCACA-CGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCG-TCC- 99524 Query 66879 TGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAAT 66938 | | || | ||| ||||| ||||||||||||| ||||||||| ||| ||||| | Sbjct 99525 --AGCTTCAACAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGT 99582 Query 66939 C 66939 | Sbjct 99583 C 99583 >seq18 Length=597235 Score = 264 bits (292), Expect = 9e-66 Identities = 578/852 (68%), Gaps = 14/852 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||||| |||||| | ||| || Sbjct 244919 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGATTGATCTG 244860 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | || | | | || | ||| | | ||||| Sbjct 244859 TCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAG-GACGAAAAGTACTTCATCTC 244801 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||||||||| || || || || ||||| ||||| | | || || Sbjct 244800 GCACGTCCTCGCCTTCTTTGCCGCCTCAGATGGCATTGTCAACGAGAACCTGGTTGAGCG 244741 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | ||||| || | | ||||| || || ||||||||||||||||| || Sbjct 244740 CTTCTCAGGCGAGGTCCAGATCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 244681 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| |||| | |||||||| |||||||||| ||||| || Sbjct 244680 GGAGAACATCCACTCCGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGAGCCCGC 244621 Query 61383 GGAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | || | | | ||||||| |||||||| || || || | || || || | Sbjct 244620 CCAGCG-CAGCTACCTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGCCG 244562 Query 61442 ATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 | |||||| |||| ||||| || | || | | | || |||| | || || |||| Sbjct 244561 ACTGGGCCCTCAAGTGGATTGCCGACCACGA-GTCGACCTTTGCCCAGCGCCTGGTGGCC 244503 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | |||||||| | || ||| || | |||||| | || || ||| || Sbjct 244502 TTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCGCCTTTGCCTCCATTTTCTGGCTGCGC 244443 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || ||||| || |||||||| |||||||| ||| ||| |||| || |||||||||||| Sbjct 244442 AAGCGTGGTCTGATGCCCGGCCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAGGGC 244383 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||| || ||||| |||| ||| ||| | ||| || || || || Sbjct 244382 CTGCACACCGACTTTGCCTGCCTGCTCTTC--TCGC-ACCTGAACAACCGCCCCAGCAAG 244326 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740 ||| | | || || | ||| || || || || |||| || |||||||| Sbjct 244325 AAGCTCATTGAGGAAATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTGACTGAG 244266 Query 61741 GCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTT 61800 || ||||| | | || |||||||||| | || ||| |||||| ||||| ||| Sbjct 244265 GCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTT 244206 Query 61801 GTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859 || |||||||||||| |||| | | || | ||| || |||| | | ||||| Sbjct 244205 GTCGCCGACCGTCTGCTGGTGGCCCTCGGCAACGAAAAGG-TCTACCGCTCCACGAACCC 244147 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 ||||| || ||||| | || ||||| | ||||||||| || || || ||||| ||||| Sbjct 244146 CTTTGACTTTATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGT 244087 Query 61920 AGGCGACTATCA 61931 |||||||| || Sbjct 244086 TGGCGACTACCA 244075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567631752640