Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1790 632 8e-179 >seq1790 Length=4252 Score = 632 bits (700), Expect = 8e-179 Identities = 540/660 (82%), Gaps = 16/660 (2%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||| ||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 2104 AGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 2163 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2164 CTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 2223 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 2224 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 2283 Query 208 CAGACTTGCCCG---CAGTTGCTCAACCGGCCCCTCGGCC-GGTGCACTCTTCTGCGGTC 263 |||||||| | ||||| | | |||| | ||| ||||| | | | Sbjct 2284 CAGACTTGTCTCTATCAGTTTTGCTAGTTT----TCGGACTGGTTTACTCTGTTA-GTAC 2338 Query 264 AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGG 323 ||||||||||||| | | ||| |||||| ||||||||||| |||| ||| Sbjct 2339 AGGCCAGCATCAGTTTGTTGTTAGGGAGAAAGGCTTAGGGAATGTGGCTCCCTC--GGGA 2396 Query 324 GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGA 383 |||||||||||| | ||| | || | | ||||||| ||||||| |||| |||| Sbjct 2397 GTGTTATAGCCCTTTGCATAATACCTTTCGGCAG-ACTGAGGACCGCGCTTCGGCAAGGA 2455 Query 384 TGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCT 443 ||||||||||||||| | |||| ||||||||| |||||||||||||||||| | | | | Sbjct 2456 TGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACCTTAT 2515 Query 444 ATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC 503 ||||||||||||||||| |||||| |||||||||||| ||||||| ||||| || | Sbjct 2516 GTGCGAGTGTTTGGGTGTAAAACCCCAGCGCGTAATGAACGTGAACGTAGGTGAGAGCTT 2575 Query 504 GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 || ||| ||||||||||| ||||||| ||||||||||||||||||||||| | Sbjct 2576 C----GGCGCATCATCGACCGATTCTGATGTTCTCGGATGGATTTGAGTAAGAGCACACA 2631 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 | | |||||||||||| |||||||||||| || |||||||||||||||||||||||||| Sbjct 2632 GGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAGAGGAAACTCTG 2691 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||| ||||||||||||||||||||| || | || ||||||| Sbjct 2692 GTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAGCATGGGGGCGA 2751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079950343250