Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1790 356 4e-96 seq224 80.6 4e-13 >seq1790 Length=4252 Score = 356 bits (394), Expect = 4e-96 Identities = 236/258 (91%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1069 ACTCGCTGGCTGTGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1010 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 1009 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGCG 951 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || | || |||||||||||||||||||||||||||||||||||| ||||| Sbjct 950 TACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 892 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 891 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGA 832 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 831 AAGAGCTCTCAATCTGTC 814 >seq224 Length=228608 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/56 (93%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 55 TCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTA 110 ||||||||||||||||||||||||||||||| |||| | |||| |||||||||||| Sbjct 218837 TCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTG-AGCCGATAGTCCCTCTA 218783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796782130515