Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq637 269 4e-70 seq928 235 8e-60 seq362 116 6e-24 seq159 73.4 6e-11 >seq637 Length=7549 Score = 269 bits (298), Expect = 4e-70 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 5983 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5926 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 5925 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 5866 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 5865 ACCCAGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 5808 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5807 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 5759 >seq928 Length=1261 Score = 235 bits (260), Expect = 8e-60 Identities = 192/229 (84%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || | |||||| ||||||||| || ||||||| ||| | Sbjct 500 GTACAAAGGGCAGGGACGTAATCGGCACGAGCT-GATGACTCGTGCCTACTAGGCATT-C 443 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| ||| | |||||| Sbjct 442 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGGGTTTAACAAGATT 383 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| |||| |||||||| ||||| || ||||||||||||||||||| Sbjct 382 ACCCAAACCTCTCGGTTAAGGTGATGTACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCG 323 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 322 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCGCGCACTTCC 274 >seq362 Length=27520 Score = 116 bits (128), Expect = 6e-24 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 27392 CAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCA 27451 Query 222 AACTTCC 228 ||||||| Sbjct 27452 AACTTCC 27458 Score = 77.0 bits (84), Expect = 5e-12 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 27520 CAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 27476 >seq159 Length=77060 Score = 73.4 bits (80), Expect = 6e-11 Identities = 40/40 (100%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751989516885