Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq684 136 1e-29 seq1439 129 1e-27 >seq684 Length=5821 Score = 136 bits (150), Expect = 1e-29 Identities = 199/278 (72%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| || ||| ||||||||||||| | | |||||||| | Sbjct 4662 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGC 4721 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| | ||||| |||||| | | | ||| | | ||||| ||||||||||||||||| Sbjct 4722 ATCGTTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGA 4781 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || | || | || ||||||| || | ||||| || |||| | || |||| ||| Sbjct 4782 CCCTCATAGGTAAGGCCGCCATTAATCGGGGTGTCCTTCAAAACCT--CAGTTA-ATAAT 4838 Query 187 C-----CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTT 240 | ||| ||| || ||| || |||||| | |||||| | |||| | | || Sbjct 4839 CAAGGTAGATCCGTTACCCAGCCGACATTGGGCAGACATCACACTCAATACTTTGATTTT 4898 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | |||||||||||||||||||||| |||||||||| Sbjct 4899 TTATCTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCG 4936 >seq1439 Length=29999 Score = 129 bits (142), Expect = 1e-27 Identities = 197/275 (72%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||| |||| |||||| ||| ||||||||||||||| | |||||||| |||| Sbjct 3304 CTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGTATCG 3245 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| |||||| |||| | | | | ||| | | ||||| ||||||||||||||||||| | Sbjct 3244 TTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCT 3185 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC---TTCGCGT-TAGCTAAC 186 | |||| ||||||| || ||||||| ||| || | | | | || || || Sbjct 3184 CA-CGTTAAGGCCGCCTTTAACCGGGGTTTCCGTCCACATCAAATATTAGTATATTCAAT 3126 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCGTG 245 || |||||| |||||||||||||| |||||| ||||| | | ||| | Sbjct 3125 TATGTCTGTTAACCAGCCGGCACCGGGCAGATATCACACTTTATACTTAGATTTTTAATC 3066 Query 246 TTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| ||| ||||||||||||| | |||||||||| Sbjct 3065 TTTCAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 3031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260781857088