Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1439 86.0 1e-14 seq684 84.2 5e-14 >seq1439 Length=29999 Score = 86.0 bits (94), Expect = 1e-14 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||||| || | ||||||| |||||||| Sbjct 3300 ATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGTATCGTTAC 3241 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 3240 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 3182 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCAC 162 |||| ||||||| || || |||| || || ||| Sbjct 3181 GTTAAGGCCGCCTTTAACCGGGGTTTCCGTCCAC 3148 >seq684 Length=5821 Score = 84.2 bits (92), Expect = 5e-14 Identities = 107/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG----TGCCCAAATCG 64 |||| ||| | ||| ||||||||| ||| | || | ||||||| ||| |||| Sbjct 4670 ATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGC----ATCG 4725 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||| | | ||| ||| || | | | ||| | | ||||| ||||||||||||||||||| | Sbjct 4726 TTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGACCCT 4785 Query 125 TATAGTTACGGCCGCCGTTTACTGGGG 151 |||| || ||||||| || | |||| Sbjct 4786 CATAGGTAAGGCCGCCATTAATCGGGG 4812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062384712064