Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq637 361 9e-98 seq928 297 3e-78 seq362 129 9e-28 seq159 113 7e-23 seq227 102 1e-19 >seq637 Length=7549 Score = 361 bits (400), Expect = 9e-98 Identities = 238/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5841 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5782 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 5781 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 5723 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 5722 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 5664 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 5663 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 5604 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 5603 AAAGAGCTCTCAATCTGTC 5585 >seq928 Length=1261 Score = 297 bits (328), Expect = 3e-78 Identities = 222/258 (86%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 297 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||| | |||||||| |||| || ||| |||||||| |||||||||||| Sbjct 296 ACCTGTTATTGCCGCGCACTTCCATCGGCTTGA-GCCGATAGTCCCCTTAAGAAGCCAGC 238 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | | | || |||||||||| || |||||||||||||||||| ||||| Sbjct 237 GGCCCGCAAATGCGGACCGGGCTATTTAAG-GGCCGAGGTCTCGTTCGTTATCGCAATTA 179 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 178 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCATCCAAAAGATCAAGA 119 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 118 AAGAGCTCTCAATCTGTC 101 >seq362 Length=27520 Score = 129 bits (142), Expect = 9e-28 Identities = 81/86 (94%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 27392 CAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCA 27451 Query 77 AACTTCCATTGGCTGGAAGCCAATAG 102 ||||||||| |||| | |||| |||| Sbjct 27452 AACTTCCATCGGCTTG-AGCCGATAG 27476 Score = 84.2 bits (92), Expect = 3e-14 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 38 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCC 97 |||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||| Sbjct 27520 CAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCTATCGGCT-CAAGCC 27462 Query 98 AAT 100 || Sbjct 27461 GAT 27459 >seq159 Length=77060 Score = 113 bits (124), Expect = 7e-23 Identities = 72/77 (94%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 44 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGT 103 |||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||| Sbjct 1 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTG-AGCCGATAGT 59 Query 104 CCCTCTAAGAAGCCAGC 120 |||||||||||||| || Sbjct 60 CCCTCTAAGAAGCCGGC 76 >seq227 Length=51345 Score = 102 bits (112), Expect = 1e-19 Identities = 95/121 (79%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||||| | ||||||||| |||||| |||| ||||||| | ||||| ||| Sbjct 24503 TACTTAGCAGGCCAGGGTCTCGTTTTTTATCGCGGTTAAGCAGACAATTTACTCCGCCAG 24562 Query 203 CTAAGAACGGCCATG------CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||||| | |||||| |||||||||||| | ||||||||||||||| ||||| || Sbjct 24563 CTAAGAGCAGCCATGCACCACCACCACCACCCACAAAATCAAGAAAGAGCTTTCAATATG 24622 Query 257 T 257 | Sbjct 24623 T 24623 Score = 82.4 bits (90), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||| || Sbjct 24427 TACTCGCTGGCTCCGTCAGTGCAGCGCGCGAGCGGCCCAGAATATCTAAGGACATCAAAG 24486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796788892359