Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq637 455 6e-126 seq928 401 1e-109 seq362 149 1e-33 seq159 138 2e-30 seq227 100 5e-19 >seq637 Length=7549 Score = 455 bits (504), Expect = 6e-126 Identities = 288/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 5676 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 5735 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5736 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 5795 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||||| Sbjct 5796 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 5853 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 5854 GAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 5913 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 5914 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 5973 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 5974 CCCTTTGTA 5982 >seq928 Length=1261 Score = 401 bits (444), Expect = 1e-109 Identities = 263/290 (91%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 39 TAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC 98 ||||||||| || |||| || ||||| ||| ||||||||| |||||||||||||||||| Sbjct 210 TAAATAGCCCGGTCCGCATTTGCGGGCCGCTGGCTTCTTAAGGGGACTATCGGCTCAAGC 269 Query 99 CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 158 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270 CGATGGAAGTGCGCGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 329 Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218 ||||||||||||||| |||| ||||| ||||||||| ||| |||| |||||||||||| Sbjct 330 GCGCTACACTGACAGGGCCAGCGAGTACATCACCTTAACCGAGAGGTTTGGGTAATCTTG 389 Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 TTAAACCCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 449 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| || || ||||||||| || | |||||||||||||||||||||| Sbjct 450 TAGTAGGCACGAGTCATCAGCTCGTGCCGATTACGTCCCTGCCCTTTGTA 499 >seq362 Length=27520 Score = 149 bits (164), Expect = 1e-33 Identities = 84/85 (99%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 27476 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGT 27417 Query 145 TCTGGGCCGCACGCGCGCTACACTG 169 ||||||||||||||||||||||||| Sbjct 27416 TCTGGGCCGCACGCGCGCTACACTG 27392 Score = 95.1 bits (104), Expect = 2e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 87 ATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTC 146 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 27459 ATCGGCTTGAGCCGATAGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTC 27518 Query 147 TG 148 || Sbjct 27519 TG 27520 >seq159 Length=77060 Score = 138 bits (152), Expect = 2e-30 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 GCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 17 Query 127 TGTGATGCCCTTAGAT 142 |||||||||||||||| Sbjct 16 TGTGATGCCCTTAGAT 1 >seq227 Length=51345 Score = 100 bits (110), Expect = 5e-19 Identities = 82/97 (85%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || ||||| |||||||| ||||||||||| |||||||| ||||||| |||||| ||||| Sbjct 24486 CTTTGATGTCCTTAGATATTCTGGGCCGCTCGCGCGCTGCACTGACGGAGCCAGCGAGTA 24427 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 | || |||||||| |||| || | |||||||||||| Sbjct 24426 C-TC-CCTTGGCCTCAAGGCCTTGATAATCTTGTTAA 24392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947186369792