Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq27 273 3e-71
seq99 269 4e-70
seq1 93.3 6e-17
>seq27
Length=411
Score = 273 bits (302), Expect = 3e-71
Identities = 201/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 386 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 329
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| ||||||
Sbjct 328 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGTTTCACAAGATT 269
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||||||||| || |||| || | |||||||| ||||||||||
Sbjct 268 ACCCGGACCTTTCGGCCAAGGCAGTA--CTCGCTGGCCCCGTCAGTGTAACGCGCGTGCG 211
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 162
>seq99
Length=2041487
Score = 269 bits (298), Expect = 4e-70
Identities = 200/229 (87%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 1315572 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 1315629
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 1315630 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 1315689
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| | ||| ||||||||| || |||| || | | |||||||||||||||||||
Sbjct 1315690 ACCCAGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 1315747
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315748 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1315796
>seq1
Length=3480556
Score = 93.3 bits (102), Expect = 6e-17
Identities = 108/143 (76%), Gaps = 12/143 (8%)
Strand=Plus/Plus
Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCT 129
|| || ||||||||| | |||||||||| ||||||| | ||| |||||||||| | |||
Sbjct 247529 GAGCAGCAATTGCAACGCTCTATCCCCAGCACGATGGAGTTT--AAGATTACCCAGGCCT 247586
Query 130 GTCGGCCAAGGTGATAGA---CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186
| |||| || ||| ||| || | | ||||||||||||| | | |||||||
Sbjct 247587 GGTGGCC-----GAAAGAGTGCTCACTGTCTCCGTCAGTGTAGCGCGAG--CTGCCCAGA 247639
Query 187 ACATCTAAGGGCATCACAGACCT 209
||||||| ||||||| ||||||
Sbjct 247640 ACATCTAGCGGCATCATAGACCT 247662
Score = 82.4 bits (90), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCT 129
|| ||| |||||||||| | |||||||| ||| | | | ||| |||||| ||| | |||
Sbjct 247213 GAGCAATAATTGCAATGCTTTATCCCCAGCACAACGGAGTTTAGAAGATTGCCCAGCCCT 247272
Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189
|| ||| | || | |||| | | ||||||| | ||| ||||||||||||||
Sbjct 247273 TCTGGTCAAAG-GAGTG-CTCGCTC----CGTCAGTGTGACTCGCATGCGGCCCAGAACA 247326
Query 190 TCTAAGGGCATCACAGACCT 209
|| | |||||||||||||||
Sbjct 247327 TCGAGGGGCATCACAGACCT 247346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751999045665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |