Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq27 273 3e-71 seq99 269 4e-70 seq1 93.3 6e-17 >seq27 Length=411 Score = 273 bits (302), Expect = 3e-71 Identities = 201/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 386 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 329 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 328 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGGGTTTCACAAGATT 269 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||||||||| || |||| || | |||||||| |||||||||| Sbjct 268 ACCCGGACCTTTCGGCCAAGGCAGTA--CTCGCTGGCCCCGTCAGTGTAACGCGCGTGCG 211 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 210 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 162 >seq99 Length=2041487 Score = 269 bits (298), Expect = 4e-70 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 1315572 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 1315629 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 1315630 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 1315689 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 1315690 ACCCAGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 1315747 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315748 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1315796 >seq1 Length=3480556 Score = 93.3 bits (102), Expect = 6e-17 Identities = 108/143 (76%), Gaps = 12/143 (8%) Strand=Plus/Plus Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCT 129 || || ||||||||| | |||||||||| ||||||| | ||| |||||||||| | ||| Sbjct 247529 GAGCAGCAATTGCAACGCTCTATCCCCAGCACGATGGAGTTT--AAGATTACCCAGGCCT 247586 Query 130 GTCGGCCAAGGTGATAGA---CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 | |||| || ||| ||| || | | ||||||||||||| | | ||||||| Sbjct 247587 GGTGGCC-----GAAAGAGTGCTCACTGTCTCCGTCAGTGTAGCGCGAG--CTGCCCAGA 247639 Query 187 ACATCTAAGGGCATCACAGACCT 209 ||||||| ||||||| |||||| Sbjct 247640 ACATCTAGCGGCATCATAGACCT 247662 Score = 82.4 bits (90), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCT 129 || ||| |||||||||| | |||||||| ||| | | | ||| |||||| ||| | ||| Sbjct 247213 GAGCAATAATTGCAATGCTTTATCCCCAGCACAACGGAGTTTAGAAGATTGCCCAGCCCT 247272 Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 || ||| | || | |||| | | ||||||| | ||| |||||||||||||| Sbjct 247273 TCTGGTCAAAG-GAGTG-CTCGCTC----CGTCAGTGTGACTCGCATGCGGCCCAGAACA 247326 Query 190 TCTAAGGGCATCACAGACCT 209 || | ||||||||||||||| Sbjct 247327 TCGAGGGGCATCACAGACCT 247346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999045665