Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq99 717 0.0 seq120 107 8e-21 >seq99 Length=2041487 Score = 717 bits (794), Expect = 0.0 Identities = 565/665 (85%), Gaps = 15/665 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| || Sbjct 1314642 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 1314583 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314582 GTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1314523 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||| ||| |||||| |||||| || |||||||||||||||||||||||||||| Sbjct 1314522 TGAAAAGCACCTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 1314463 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGG 261 | |||||||||| ||| | | ||| || || ||| |||||||||| | | | Sbjct 1314462 GTGACCAGACTTGGGCGCGGCGGATCATCCGGGGTTCTC-CCCGGTGCACTTCGCCGTGT 1314404 Query 262 TCAGGCCAGCATCAGCTCGG-GCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 ||||||||||||||| |||| |||| ||| |||||| |||||| ||||| || || | Sbjct 1314403 TCAGGCCAGCATCAGTTCGGCGCGG-GGGAAAAAGGCTTCGGGAACGTGGCTCC--TCCG 1314347 Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCT 379 || ||||||||||||| | ||| | || || ||||||||||| |||||| | || Sbjct 1314346 GGAGTGTTATAGCCCGTTGCATAATAC--CCTGCGCTGGACTGAGGACCGCGCATCTGCA 1314289 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||| | Sbjct 1314288 AGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGAAACACGGACCAAGGAGTC-GTC 1314230 Query 440 ATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| | Sbjct 1314229 TTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAG 1314170 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | || ||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1314169 A----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGC 1314114 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| | |||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1314113 ATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAA 1314054 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || || Sbjct 1314053 CTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGG 1313994 Query 679 GGCGA 683 ||||| Sbjct 1313993 GGCGA 1313989 >seq120 Length=597 Score = 107 bits (118), Expect = 8e-21 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||||||||| |||||||||||||| |||||||||||| ||||| || |||||||| | Sbjct 505 TGTGAAGCTCCCTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCT-AAGGGGAGGTATAC 563 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGAT 116 | |||| || |||||||| ||| |||||||||| Sbjct 564 TCCTTCCAAGGCTAAATACCGGCTAGAGACCGAT 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079997190050