Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq99 361 9e-98
seq27 316 3e-84
seq1 73.4 6e-11
>seq99
Length=2041487
Score = 361 bits (400), Expect = 9e-98
Identities = 238/259 (92%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315714 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1315773
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 1315774 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 1315832
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1315833 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 1315891
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1315892 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 1315951
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 1315952 AAAGAGCTCTCAATCTGTC 1315970
Score = 150 bits (166), Expect = 3e-34
Identities = 184/240 (77%), Gaps = 11/240 (5%)
Strand=Plus/Minus
Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCAT-CACAG-ACCTGTTATTGCCTCAAAC 79
|||| ||| || ||||||||||||| || ||| || | | |||||||||||||||||
Sbjct 1341766 TAGCACGC-TGTAGCCCAGAACATCTCAGAACATTCAGGGGATCTGTTATTGCCTCAAAC 1341708
Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATG- 138
|||| | | | || ||| ||||||| | |||||||| | | || || | ||
Sbjct 1341707 TTCCGTCAGTTTGA-GCCGATAGTCCATTGAAGAAGCCTTACTGC---CAAAG-CAATAC 1341653
Query 139 GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA 198
||||||||||| |||| ||| ||| ||| ||||| | ||| | ||||||||||||||
Sbjct 1341652 GGGCTATTTAGTAGGTCAAG-TCTGGTTTGTTATTGCAATACAGTAGACAAATCACTCCT 1341594
Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| ||||||| |||||| || |||||||||| ||| |||||| |||| ||||||| ||
Sbjct 1341593 CCAATTAAGAACAGCCATGAACTACCACCCATACAAT-AAGAAAAAGCTCTCAATCTATC 1341535
>seq27
Length=411
Score = 316 bits (350), Expect = 3e-84
Identities = 218/245 (89%), Gaps = 1/245 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 244 TACTCGCTGGCCCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 185
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| | ||
Sbjct 184 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGTCGGC 126
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| ||| || || ||| ||||||||||||||||||||||||||||| |||||
Sbjct 125 GTACTACCGAGGTAATACGGACTAGTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 66
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 65 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 6
Query 241 AAGAG 245
|||||
Sbjct 5 AAGAG 1
>seq1
Length=3480556
Score = 73.4 bits (80), Expect = 6e-11
Identities = 49/55 (89%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64
||||||||||||| | ||| |||||||||||||||| | |||||||||||||||
Sbjct 247292 GCTCCGTCAGTGTGACTCGCATGCGGCCCAGAACATCGAGGGGCATCACAGACCT 247346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796798988811
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |