Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq99 361 9e-98 seq27 316 3e-84 seq1 73.4 6e-11 >seq99 Length=2041487 Score = 361 bits (400), Expect = 9e-98 Identities = 238/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315714 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1315773 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1315774 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 1315832 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 1315833 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 1315891 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1315892 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 1315951 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 1315952 AAAGAGCTCTCAATCTGTC 1315970 Score = 150 bits (166), Expect = 3e-34 Identities = 184/240 (77%), Gaps = 11/240 (5%) Strand=Plus/Minus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCAT-CACAG-ACCTGTTATTGCCTCAAAC 79 |||| ||| || ||||||||||||| || ||| || | | ||||||||||||||||| Sbjct 1341766 TAGCACGC-TGTAGCCCAGAACATCTCAGAACATTCAGGGGATCTGTTATTGCCTCAAAC 1341708 Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATG- 138 |||| | | | || ||| ||||||| | |||||||| | | || || | || Sbjct 1341707 TTCCGTCAGTTTGA-GCCGATAGTCCATTGAAGAAGCCTTACTGC---CAAAG-CAATAC 1341653 Query 139 GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA 198 ||||||||||| |||| ||| ||| ||| ||||| | ||| | |||||||||||||| Sbjct 1341652 GGGCTATTTAGTAGGTCAAG-TCTGGTTTGTTATTGCAATACAGTAGACAAATCACTCCT 1341594 Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||| |||||| || |||||||||| ||| |||||| |||| ||||||| || Sbjct 1341593 CCAATTAAGAACAGCCATGAACTACCACCCATACAAT-AAGAAAAAGCTCTCAATCTATC 1341535 >seq27 Length=411 Score = 316 bits (350), Expect = 3e-84 Identities = 218/245 (89%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 244 TACTCGCTGGCCCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 185 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| | || Sbjct 184 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGTCGGC 126 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || || ||| ||||||||||||||||||||||||||||| ||||| Sbjct 125 GTACTACCGAGGTAATACGGACTAGTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 66 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 65 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 6 Query 241 AAGAG 245 ||||| Sbjct 5 AAGAG 1 >seq1 Length=3480556 Score = 73.4 bits (80), Expect = 6e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64 ||||||||||||| | ||| |||||||||||||||| | ||||||||||||||| Sbjct 247292 GCTCCGTCAGTGTGACTCGCATGCGGCCCAGAACATCGAGGGGCATCACAGACCT 247346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798988811