Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq99 455 6e-126
seq27 398 1e-108
seq1 131 3e-28
>seq99
Length=2041487
Score = 455 bits (504), Expect = 6e-126
Identities = 288/309 (93%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 1315879 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 1315820
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315819 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1315760
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | || |||||||||
Sbjct 1315759 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 1315702
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1315701 GAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1315642
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1315641 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 1315582
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 1315581 CCCTTTGTA 1315573
Score = 93.3 bits (102), Expect = 8e-17
Identities = 106/138 (77%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 29 CTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTAT 88
||| |||| |||||||||| | |||||||| | | ||||||| | |||||||
Sbjct 1341633 CTTGACCTACTAAATAGCCCGTATTGCTTTGGCAGTAAG---GCTTCTTCAATGGACTAT 1341689
Query 89 CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT-CTGTG-ATGCCCTTAGATGTTC 146
|||||||| | || ||||||||||||||||||||| | | || ||| || ||||||||
Sbjct 1341690 CGGCTCAAACTGACGGAAGTTTGAGGCAATAACAGATCCCCTGAATGTTCTGAGATGTTC 1341749
Query 147 TGGGCCGCACGCGCGCTA 164
||||| || ||| ||||
Sbjct 1341750 TGGGCTACA-GCGTGCTA 1341766
>seq27
Length=411
Score = 398 bits (440), Expect = 1e-108
Identities = 274/309 (89%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||| ||| | | | | || | ||||| ||||||||
Sbjct 79 GAACGAGACCTTAACCTGCTAACTAGTCCGTATTACCTCGGTAGTACGCCGACTTCTTAG 138
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 198
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||| ||||||||| | |||| ||||| | | ||||||||
Sbjct 199 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGGGCCAGCGAGTACTGC--CTTGGCCG 256
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 257 AAAGGTCCGGGTAATCTTGTGAAACCCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 316
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 317 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 376
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 377 CCCTTTGTA 385
>seq1
Length=3480556
Score = 131 bits (144), Expect = 3e-28
Identities = 115/141 (82%), Gaps = 7/141 (5%)
Strand=Plus/Minus
Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181
||||||||||||||| | |||||||||||||||| ||| | |||||||| ||| ||
Sbjct 247346 AGGTCTGTGATGCCCCTCGATGTTCTGGGCCGCATGCGAGTCACACTGACGGAG----CG 247291
Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241
|| || | ||| || ||||| ||||| |||||| ||||||| || |||||||||||
Sbjct 247290 AG--CACTCCTTTGACCAGAAGGGCTGGGCAATCTT-CTAAACTCCGTTGTGCTGGGGAT 247234
Query 242 AGAGCATTGCAATTATTGCTC 262
| |||||||||||||||||||
Sbjct 247233 AAAGCATTGCAATTATTGCTC 247213
Score = 114 bits (126), Expect = 2e-23
Identities = 83/96 (86%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|||| || |||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 246466 GAGCTAGCCCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 246407
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGC 115
||||||||||||| ||||| |||| |||||||||||
Sbjct 246406 AGGGACTATCGGCCCAAGCTGATGAAAGTTTGAGGC 246371
Score = 111 bits (122), Expect = 3e-22
Identities = 113/142 (80%), Gaps = 9/142 (6%)
Strand=Plus/Minus
Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181
|||||| ||||||| |||||||||||||| || ||||| ||||||||| ||| || |
Sbjct 247662 AGGTCTATGATGCCGCTAGATGTTCTGGGCAGCTCGCGC--TACACTGACGGAGACAGTG 247605
Query 182 AGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240
|| || | | || |||| ||| |||||||||||| |||||| ||||||||||||
Sbjct 247604 AG--CA-CTCTTTCGGCCACCAGGCCTGGGTAATCTT---AAACTCCATCGTGCTGGGGA 247551
Query 241 TAGAGCATTGCAATTATTGCTC 262
|||||| |||||||| |||||
Sbjct 247550 TAGAGCGTTGCAATTGCTGCTC 247529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947198759168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |