Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq99 455 6e-126 seq27 398 1e-108 seq1 131 3e-28 >seq99 Length=2041487 Score = 455 bits (504), Expect = 6e-126 Identities = 288/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 1315879 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 1315820 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315819 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1315760 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | || ||||||||| Sbjct 1315759 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 1315702 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1315701 GAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1315642 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 1315641 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 1315582 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 1315581 CCCTTTGTA 1315573 Score = 93.3 bits (102), Expect = 8e-17 Identities = 106/138 (77%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 29 CTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTAT 88 ||| |||| |||||||||| | |||||||| | | ||||||| | ||||||| Sbjct 1341633 CTTGACCTACTAAATAGCCCGTATTGCTTTGGCAGTAAG---GCTTCTTCAATGGACTAT 1341689 Query 89 CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT-CTGTG-ATGCCCTTAGATGTTC 146 |||||||| | || ||||||||||||||||||||| | | || ||| || |||||||| Sbjct 1341690 CGGCTCAAACTGACGGAAGTTTGAGGCAATAACAGATCCCCTGAATGTTCTGAGATGTTC 1341749 Query 147 TGGGCCGCACGCGCGCTA 164 ||||| || ||| |||| Sbjct 1341750 TGGGCTACA-GCGTGCTA 1341766 >seq27 Length=411 Score = 398 bits (440), Expect = 1e-108 Identities = 274/309 (89%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||| ||| | | | | || | ||||| |||||||| Sbjct 79 GAACGAGACCTTAACCTGCTAACTAGTCCGTATTACCTCGGTAGTACGCCGACTTCTTAG 138 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 198 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||| ||||||||| | |||| ||||| | | |||||||| Sbjct 199 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGGGCCAGCGAGTACTGC--CTTGGCCG 256 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||| Sbjct 257 AAAGGTCCGGGTAATCTTGTGAAACCCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 316 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 317 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 376 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 377 CCCTTTGTA 385 >seq1 Length=3480556 Score = 131 bits (144), Expect = 3e-28 Identities = 115/141 (82%), Gaps = 7/141 (5%) Strand=Plus/Minus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||| | |||||||||||||||| ||| | |||||||| ||| || Sbjct 247346 AGGTCTGTGATGCCCCTCGATGTTCTGGGCCGCATGCGAGTCACACTGACGGAG----CG 247291 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || || | ||| || ||||| ||||| |||||| ||||||| || ||||||||||| Sbjct 247290 AG--CACTCCTTTGACCAGAAGGGCTGGGCAATCTT-CTAAACTCCGTTGTGCTGGGGAT 247234 Query 242 AGAGCATTGCAATTATTGCTC 262 | ||||||||||||||||||| Sbjct 247233 AAAGCATTGCAATTATTGCTC 247213 Score = 114 bits (126), Expect = 2e-23 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 |||| || |||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 246466 GAGCTAGCCCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 246407 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGC 115 ||||||||||||| ||||| |||| ||||||||||| Sbjct 246406 AGGGACTATCGGCCCAAGCTGATGAAAGTTTGAGGC 246371 Score = 111 bits (122), Expect = 3e-22 Identities = 113/142 (80%), Gaps = 9/142 (6%) Strand=Plus/Minus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 |||||| ||||||| |||||||||||||| || ||||| ||||||||| ||| || | Sbjct 247662 AGGTCTATGATGCCGCTAGATGTTCTGGGCAGCTCGCGC--TACACTGACGGAGACAGTG 247605 Query 182 AGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 || || | | || |||| ||| |||||||||||| |||||| |||||||||||| Sbjct 247604 AG--CA-CTCTTTCGGCCACCAGGCCTGGGTAATCTT---AAACTCCATCGTGCTGGGGA 247551 Query 241 TAGAGCATTGCAATTATTGCTC 262 |||||| |||||||| ||||| Sbjct 247550 TAGAGCGTTGCAATTGCTGCTC 247529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198759168