Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq99 235 9e-60 seq1 93.3 7e-17 >seq99 Length=2041487 Score = 235 bits (260), Expect = 9e-60 Identities = 225/279 (81%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 1311906 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1311849 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1311848 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1311789 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| ||||| | | || |||| | ||| |||| | |||||||||||||| | Sbjct 1311788 GAACGCGGTGA-TAGCACCCGCACGT-ATAGACGGACAAGAATAGGCTTCGGCTTAGTGT 1311731 Query 181 CTTAGCAGGC-CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 || ||||||| | | | |||| |||||| | ||| | | | ||| |||| Sbjct 1311730 CTCAGCAGGCGATTCCTCCGTGGTCC--TCGAAGCGGGCCGCGGT-ATTTCGCGTATTGT 1311674 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| || | || ||| ||||||||||||||||||| Sbjct 1311673 AATTTCAACACGAGCGGGGTTAAATCCTTTGCAGACGAC 1311635 >seq1 Length=3480556 Score = 93.3 bits (102), Expect = 7e-17 Identities = 59/63 (94%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| | Sbjct 281167 CCGCGAAGC-ACCATCTGCTGGATAATGGCTGAACGCCTCCAAGTCAGAATCCATGCCGG 281109 Query 122 AAC 124 ||| Sbjct 281108 AAC 281106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819198960384