Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq99 702 0.0
seq1 75.2 3e-11
>seq99
Length=2041487
Score = 702 bits (778), Expect = 0.0
Identities = 459/504 (91%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316685 GTACTCATTCCGATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 1316744
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1316745 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1316804
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 1316805 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCCACCATGTTT 1316864
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|| || | || | |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1316865 GGACAAGACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAGCCATCGCCGGCA 1316924
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||| ||||||| |||||| |||| |||||| ||||||||| |||| |||||
Sbjct 1316925 CAAGGCCTGTCGATTCGACTAGTTATCATGATTCACCAGAGAGCCCCGAGGGGCATTGGT 1316984
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1316985 TTTTAATCTAATAAATACAACCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 1317044
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||| ||| ||||||||||||||||||| || ||||||
Sbjct 1317045 AATTACCACGGTTATCCAAGTAGTAAAGTATTATCAAATAAACGATAACTTATATAATGA 1317104
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1317105 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1317163
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 1317164 AGACAAGCATATGACTACTGGCAG 1317187
>seq1
Length=3480556
Score = 75.2 bits (82), Expect = 3e-11
Identities = 79/104 (76%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 144 GAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAG 203
||| ||||| ||||||||| || | ||||| | || || | || | |||||||||
Sbjct 94997 GAATCCTAACATCCCGTTACCTGTGGCCACCATATTTGGACAAGACCCAAACATCGAAAG 94938
Query 204 TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC 247
|||||||| ||||||||||| || ||| |||||| | |||||
Sbjct 94937 TTGATAGGCAAGAAATTTGAAGGAGACATTGCCGGCACCAGGCC 94894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510398021376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |