Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq99 702 0.0 seq1 75.2 3e-11 >seq99 Length=2041487 Score = 702 bits (778), Expect = 0.0 Identities = 459/504 (91%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316685 GTACTCATTCCGATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 1316744 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1316745 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1316804 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 1316805 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCCACCATGTTT 1316864 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 || || | || | |||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1316865 GGACAAGACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAGCCATCGCCGGCA 1316924 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| ||||||| |||||| |||| |||||| ||||||||| |||| ||||| Sbjct 1316925 CAAGGCCTGTCGATTCGACTAGTTATCATGATTCACCAGAGAGCCCCGAGGGGCATTGGT 1316984 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1316985 TTTTAATCTAATAAATACAACCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 1317044 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||| ||| ||||||||||||||||||| || |||||| Sbjct 1317045 AATTACCACGGTTATCCAAGTAGTAAAGTATTATCAAATAAACGATAACTTATATAATGA 1317104 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1317105 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1317163 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 1317164 AGACAAGCATATGACTACTGGCAG 1317187 >seq1 Length=3480556 Score = 75.2 bits (82), Expect = 3e-11 Identities = 79/104 (76%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 144 GAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAG 203 ||| ||||| ||||||||| || | ||||| | || || | || | ||||||||| Sbjct 94997 GAATCCTAACATCCCGTTACCTGTGGCCACCATATTTGGACAAGACCCAAACATCGAAAG 94938 Query 204 TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC 247 |||||||| ||||||||||| || ||| |||||| | ||||| Sbjct 94937 TTGATAGGCAAGAAATTTGAAGGAGACATTGCCGGCACCAGGCC 94894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510398021376