Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq66 304 1e-77 seq35 262 3e-65 >seq66 Length=2244893 Score = 304 bits (336), Expect = 1e-77 Identities = 1142/1761 (65%), Gaps = 54/1761 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | ||| || |||| ||| | || ||||||||||| || Sbjct 1019828 ATCAACTGTGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGT 1019887 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || ||| ||||| | || |||| |||| | | | || | Sbjct 1019888 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGAT 1019946 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || ||||| ||||| |||||| ||| || |||||| || || | || Sbjct 1019947 CCTTCATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACA 1020006 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | ||| | || || |||||||| || |||||||||||| | | | | || Sbjct 1020007 TCTGGACGATGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGG-GCCTTGATGTCG 1020065 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||||| | ||||| ||||| ||||| ||||| ||||| || ||| Sbjct 1020066 GCGGGAATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATA 1020125 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTT 65432 | || ||||| | || ||||| ||||| |||| ||| | | |||| || | Sbjct 1020126 GCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAG--AAGCCAGGGGTTGACAACCT 1020183 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||| | || ||||| || ||||||||||| ||| ||| || ||| ||| Sbjct 1020184 GGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATT 1020243 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 || ||||||| || || |||| ||| ||||| |||||||| ||||| | ||| || Sbjct 1020244 CATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGT 1020303 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGT----GACGCAATTCGTCCCAGTTCCACATCGGT 65608 | || | |||| | | ||| | | || || | |||||| | ||||| ||| Sbjct 1020304 TGCGAATACCGTGCTCCTTAATCTGCTCCTTGA-GCGA---GTCCCACTCCCACA--GGT 1020357 Query 65609 TTATCGTC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTG 65666 | | | ||||||| |||| || || || | || | ||| |||| Sbjct 1020358 CAGTGGGCTTGACATCC------CACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTG 1020411 Query 65667 AACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGCTGGTCTCGAGT 65725 | || ||| || || ||||| |||||||| | | || || |||||| Sbjct 1020412 ATCCCTTGAATGACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGATGC-CTCGAGG 1020470 Query 65726 GCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 || || || |||||||| || || | || | || || || || ||| Sbjct 1020471 GCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCG 1020530 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 | || | || || || |||| ||| || ||||| ||||| |||| ||| ||||| Sbjct 1020531 AAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGT 1020590 Query 65846 CGATGACGCAAATTGGAACGTCTCG--CCTCAGGTACAGGGTAGTAATTGATATCGATAA 65903 || || || || | || || |||| | || |||||||| || | |||||| | Sbjct 1020591 CGGTGGCGGCTGTT--ACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGA 1020648 Query 65904 TGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAAT 65963 |||| || | || || ||||| | | || ||| | ||| | ||| | Sbjct 1020649 TGCGGTTGAGGTTACGGACAACCACCTTG--GTAACATCGTGAAGCTTC----TTAAAGT 1020702 Query 65964 GTTTAGGA-CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022 | || | | ||| | | || ||||| || || || | ||| || | | Sbjct 1020703 CAT-AGCAGCCTTCGTTATAGTCG------ACAAAGGCAGGGAGAGCCAAAGAGGCCAAG 1020755 Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 ||||||||||| | ||||||||| || | ||||| || || || ||||| || || | Sbjct 1020756 TTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAG 1020815 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 | || ||||| |||| |||| || || |||||||| ||||| ||||||||||| | | Sbjct 1020816 CTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGC 1020875 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202 || | || | || |||||| |||| ||| | ||||| || ||| || | || Sbjct 1020876 ATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCT 1020935 Query 66203 TTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGA 66261 | || | | | |||| | | | | ||||| | || || || ||||| Sbjct 1020936 CGGATAGT-CTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTC 1020994 Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| || | || | || | || || | || || ||||||| | ||| || Sbjct 1020995 TTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAA 1021054 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | || || ||||| ||| || |||||||| |||||||| ||| ||| || || || Sbjct 1021055 GTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACG 1021114 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || ||| || ||||||| || ||||| | ||| ||||||||||||| ||||| Sbjct 1021115 GGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGC 1021174 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| || || ||||||||||| || | || || ||| |||||| |||||||| Sbjct 1021175 GTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGAC 1021234 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 ||| | || ||||||||||| || | ||| || | || ||||| || | || || Sbjct 1021235 GTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTT 1021294 Query 66562 GGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 ||||||| | ||| || || ||| || || ||| ||| || ||||| || ||||||| Sbjct 1021295 GGTGCCGGCAATGTAAGAGCC-CGTAGCACGGATACGGTGGACGTTCAGGCCGATACCAC 1021353 Query 66621 CGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGA 66678 | ||| |||| || || ||||| || | |||| | | || || |||||| Sbjct 1021354 CAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTC--GTAGATACCCTCAATGCT 1021411 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||| ||| || ||| ||||||| || || | || || || | || Sbjct 1021412 GTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTT 1021471 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798 |||||||||||| | || || |||||| | | || |||||| | ||| ||||| | Sbjct 1021472 GAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAG 1021531 Query 66799 GACAGCATCAATGTTTTCGCC 66819 |||| |||||||| || || Sbjct 1021532 GACACGCTCAATGTTGTCTCC 1021552 >seq35 Length=1329723 Score = 262 bits (290), Expect = 3e-65 Identities = 584/860 (68%), Gaps = 30/860 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || |||||||||||||| | || ||| | ||| || Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGA-GCGGTGAACAACATTTCATTA 61201 ||||| || || | |||||| | || | | ||| | | ||| || ||||| Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTAC--TTCATCT 994806 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| |||||||| || || ||||| || ||||| ||||| | | || | Sbjct 994805 CTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGC 994746 Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 ||||| || | ||||| || | | ||||| || || |||||||| |||||||| Sbjct 994745 GTTTCA-GCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 994687 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 |||||||| ||||||| |||| ||| | |||||||| || ||| ||| ||||| Sbjct 994686 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC 994627 Query 61381 GCGGAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGG----CGGTGAAGCGGA 61435 | || ||| | | ||||| ||||| ||||| || || | || | || Sbjct 994626 AGCCAGCGC-AACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAA----GA 994572 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATT 61493 | || || |||||| |||| |||||| ||| |||| | || | |||| | | || | Sbjct 994571 AGGCTGACTGGGCCATCAAGTGGATC--CAGGACAAGGACTCTTCCTTTGCTCAGCGCCT 994514 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | ||||||||| | || ||||| ||| | |||||| | ||||| || Sbjct 994513 TGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTG 994454 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | ||||| | || || ||||| || ||||||||| ||| ||| | || || || || Sbjct 994453 GCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGA 994394 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC 61673 ||||||| |||| || |||||| |||| || | | | ||| ||| || | Sbjct 994393 CGAGGGCCTGCACACCGACTTTGCTTGCCTGCTC--CACTCTC-ACCTGAAGAACCG--C 994339 Query 61674 GTCGG--AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTT 61731 | | | ||||| | | |||| || | ||| || || | ||||| || || || Sbjct 994338 GCCAGCAAGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTC 994279 Query 61732 CTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTAT 61791 |||| || ||| | ||| | || | |||||||| || ||| |||||| Sbjct 994278 TTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTAC 994219 Query 61792 ATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACG 61851 ||||| ||||||||||| |||||| | |||| | | || | || ||| || || | Sbjct 994218 ATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCC 994159 Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 ||||| ||||| |||||||| | || || |||| |||||||| || || |||||| Sbjct 994158 TCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAG 994099 Query 61912 AAACGTGTAGGCGACTATCA 61931 || ||||| ||||| || || Sbjct 994098 AAGCGTGTCGGCGAGTACCA 994079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567365257840