Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-24 seq3 89.7 2e-15 >seq1 Length=1198811 Score = 118 bits (130), Expect = 3e-24 Identities = 84/96 (88%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC----ATTCAGAGCAC 507 ||||||||| ||||||||||||||||||| || ||||||| ||| ||||||||||| Sbjct 778573 ACTCCCGCCTTTTACCCGCGCTTGGTTGACTTCCTTCACTCTGATTTGTATTCAGAGCAC 778514 Query 508 TGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||| |||||| || Sbjct 778513 TGGGCAGAAATCACATTGCGTCAACGCCACTTTGTG 778478 Score = 80.6 bits (88), Expect = 9e-13 Identities = 61/71 (86%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||| ||||| | |||||||||| |||||||| | ||||||||||||||||| | Sbjct 779677 ATCTCGTTGATCCAATTATGCGCGTCATTAATTAGACGGCGAGGCATTTGGCTACC--AT 779620 Query 439 GAGAGTCATAG 449 |||| |||||| Sbjct 779619 GAGATTCATAG 779609 Score = 78.8 bits (86), Expect = 3e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 25 TTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGC 84 || ||| || ||||||| |||||||||||||||||||||||| |||||||||| ||| | Sbjct 906094 TTCCTGGTCCCCATGAGCCCCCCTTAGGACACCTGCGTTATGATTTAACAGATTTGCATC 906153 Query 85 CCCAGC 90 ||| || Sbjct 906154 CCCGGC 906159 >seq3 Length=984773 Score = 89.7 bits (98), Expect = 2e-15 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| |||| |||| |||| | || ||||| | || |||||||||| |||| Sbjct 338548 CTCCCAATTATCCTACGCCTCCGACATCTTTTCAACATATCAAGCTAGAGTCAAATTCAA 338489 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 | | || |||||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 338488 AAAGTTCATCTTTCCCTGCTGAGTCTGCCAAGCCCGTTCTTTTGGCTGTGGTTT 338435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635193769888