Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23]
381 sequences; 37,970,415 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1 118 3e-24
seq3 89.7 2e-15
>seq1
Length=1198811
Score = 118 bits (130), Expect = 3e-24
Identities = 84/96 (88%), Gaps = 4/96 (4%)
Strand=Plus/Minus
Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC----ATTCAGAGCAC 507
||||||||| ||||||||||||||||||| || ||||||| ||| |||||||||||
Sbjct 778573 ACTCCCGCCTTTTACCCGCGCTTGGTTGACTTCCTTCACTCTGATTTGTATTCAGAGCAC 778514
Query 508 TGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||| |||||| ||
Sbjct 778513 TGGGCAGAAATCACATTGCGTCAACGCCACTTTGTG 778478
Score = 80.6 bits (88), Expect = 9e-13
Identities = 61/71 (86%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438
|||||||| ||||| | |||||||||| |||||||| | ||||||||||||||||| |
Sbjct 779677 ATCTCGTTGATCCAATTATGCGCGTCATTAATTAGACGGCGAGGCATTTGGCTACC--AT 779620
Query 439 GAGAGTCATAG 449
|||| ||||||
Sbjct 779619 GAGATTCATAG 779609
Score = 78.8 bits (86), Expect = 3e-12
Identities = 57/66 (86%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 25 TTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGC 84
|| ||| || ||||||| |||||||||||||||||||||||| |||||||||| ||| |
Sbjct 906094 TTCCTGGTCCCCATGAGCCCCCCTTAGGACACCTGCGTTATGATTTAACAGATTTGCATC 906153
Query 85 CCCAGC 90
||| ||
Sbjct 906154 CCCGGC 906159
>seq3
Length=984773
Score = 89.7 bits (98), Expect = 2e-15
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||| |||| |||| |||| | || ||||| | || |||||||||| ||||
Sbjct 338548 CTCCCAATTATCCTACGCCTCCGACATCTTTTCAACATATCAAGCTAGAGTCAAATTCAA 338489
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350
| | || |||||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 338488 AAAGTTCATCTTTCCCTGCTGAGTCTGCCAAGCCCGTTCTTTTGGCTGTGGTTT 338435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635193769888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |