Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20gamsii_20[genbank_20GCA_5F001481775.1_202015-12-23] 381 sequences; 37,970,415 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 246 2e-60 >seq9 Length=716796 Score = 246 bits (272), Expect = 2e-60 Identities = 553/822 (67%), Gaps = 8/822 (1%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || || || | ||| || | |||||||||||| | ||||||||| || | ||||| | Sbjct 53733 GGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAATG 53674 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || |||||||| || || || ||| ||||| |||| |||| || || ||||| || Sbjct 53673 ATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTACGG 53614 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||| | |||| | || |||| |||||| |||| ||| | ||| Sbjct 53613 TTGCAAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCTAGGATA 53554 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATG 66240 | || ||| || | || | || | | | |||| | || | | || || | Sbjct 53553 GAGTACCACAGCTTCTGAGCTCGGATAGT-CTTGCGACCCTTTCCTTCCTTCTCATACTT 53495 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 || || || ||||| ||| || | || | || | || || | || || Sbjct 53494 CTCATACAGCGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTAGG 53435 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||||| | ||| || | || || ||||| ||| || |||||||| ||||| Sbjct 53434 GCACATCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCA 53375 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 ||| ||| ||| || || || || || ||| || ||||||| || ||||| | ||| Sbjct 53374 GAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTC 53315 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||||||||| | || || ||||| || || ||||||||||| || | || || Sbjct 53314 AAGGAACTCAAAAACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCTCCAGGGCG 53255 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| |||||| ||||||||||| | || ||||||||||| || | ||| || | Sbjct 53254 CTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGAT 53195 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGT 66599 || ||||| || | || ||||||||| | ||| || || ||| || || ||| || Sbjct 53194 GATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCC-CGTGGCACGGATACGGT 53136 Query 66600 GAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATCGGC-CACTGT 66657 | || ||||| || |||||||| ||| |||| || || ||||| || | | ||| Sbjct 53135 GGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTGT 53076 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | | || || |||||| ||| |||| ||| || ||| ||||||| || || Sbjct 53075 C--GTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTG 53018 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 | || || || | || |||||| ||||| | || || |||||| | | || || Sbjct 53017 AGCTTGCGGGGTACCAGCGTTGAAGAGAGTGGGGGAGGCATGGGTAAAGAACTTGCTGGA 52958 Query 66778 CATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 |||| | ||| ||||| | |||| |||||||| || || Sbjct 52957 CATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC 52916 Score = 152 bits (168), Expect = 4e-32 Identities = 324/475 (68%), Gaps = 8/475 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | ||| || |||| ||| | || ||||||||||| || Sbjct 54640 ATCAACTGTGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGTAGGTAGTACATGCCAGT 54581 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || ||| ||||| | || | || |||| | | | || | Sbjct 54580 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTGATCTTGCCCATTGTGGGAT 54522 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || ||||| ||||| ||| || ||| || |||||| || || | || Sbjct 54521 CCTTCATGTGAATGTTCAAGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCTGACA 54462 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | ||| |||| || |||||||| || |||||||||||| | | | | || Sbjct 54461 TCTGGACGATGTGACGCTGAGAGATCTCCCAAACAGTCTTGTACAGG-GCCTTGATGTCG 54403 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||||| | ||||| ||||| ||||| ||||| ||||| || ||| Sbjct 54402 GCGGGAATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATA 54343 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTT 65432 | || ||||| | || ||||| ||||| |||| ||| | | |||| || | Sbjct 54342 GCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAG--AAGCCAGGGGTTGACAACCT 54285 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||| | || ||||| || ||||||||||| ||| ||| || ||| ||| Sbjct 54284 GGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATT 54225 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 || |||||||||| || |||| ||| ||||| |||||||| ||||| | ||| Sbjct 54224 CATTGTTGCCTAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAA 54170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566153917840