Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq665 269 5e-70
seq467 104 4e-20
>seq665
Length=14153
Score = 269 bits (298), Expect = 5e-70
Identities = 173/189 (92%), Gaps = 6/189 (3%)
Strand=Plus/Plus
Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGAC 60
Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT------AACTTTTCT 226
|||||||| |||||||||| |||||||||||||||| |||||||| | |||| |
Sbjct 61 GTCGCTATCAACGCTTGGCCGCCACAAGCCAGTTATTCCTGTGGTGGTTGGAGCTTTCTT 120
Query 227 GGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTT 286
||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCACGTCTAGCCTCCAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTT 180
Query 287 TGTATTCAC 295
|||||||||
Sbjct 181 TGTATTCAC 189
>seq467
Length=26179
Score = 104 bits (114), Expect = 4e-20
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 3 CTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATG 62
|||||| ||||||| ||| || || |||||||||||||||||||||||||||||||| |
Sbjct 76 CTAAGCTCAATTACCTTTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCACG 18
Query 63 ACGGTCTAAACCCAGCT 79
|||||||||||||||||
Sbjct 17 ACGGTCTAAACCCAGCT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854386568832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |