Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq246 255 5e-63
seq236 226 2e-54
>seq246
Length=51316
Score = 255 bits (282), Expect = 5e-63
Identities = 581/858 (68%), Gaps = 26/858 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||||||||| ||||| ||||||||||| | || ||| | ||| ||
Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739
Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201
||||| || || | || ||| | || | || | | ||| || |||||
Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGCCTGAATGATGACGAGAAGTAC--TTCATCT 23681
Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261
|| | |||| ||||||||||| || || || || ||||| ||||| | | || |
Sbjct 23680 CTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGC 23621
Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320
| ||| || | ||||| || | | ||||| || || |||||||||||||||||
Sbjct 23620 GCTTCA-GCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 23562
Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--C 61378
|||||||| ||||||| |||| ||| | |||||||| || ||||||| |||| |
Sbjct 23561 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 23502
Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG-GCGGTGAAGCG-GAA 61436
| | | | || | ||||| ||||| ||||| || || || | || |||
Sbjct 23501 AGCCAGCGCAGCTACC--TCTTCAACGCCATTGAGACCATTCCTTGCATTC--GCAAGAA 23446
Query 61437 AGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTG 61494
|| || |||||| |||| |||||| ||| |||| || | |||| | || ||
Sbjct 23445 GGCCGACTGGGCCATCAAGTGGATC--CAGGACAAGAACTCTTCCTTTGCCCAGCGCCTG 23388
Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554
| || ||||| | ||||||||| | || ||||| || | |||||| | ||||| |||
Sbjct 23387 GTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 23328
Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614
| ||||| || || || ||||| ||||||||||| ||| ||| | || || || |||
Sbjct 23327 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 23268
Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674
||||| |||| ||| ||||| |||| || | | | || ||| ||| |
Sbjct 23267 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG--CACTCTC-ACCTCAAGAACCGTGCT 23211
Query 61675 TCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCT 61733
||||| ||| | |||| || | ||| || || || || ||||| || |
Sbjct 23210 AGCAAGGAG-GTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTT 23152
Query 61734 GACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATAT 61793
||| || ||| | ||| | | || | |||||||| | || ||| |||||| ||
Sbjct 23151 GACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACAT 23092
Query 61794 TGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA 61853
||| ||||||||||| |||||| | |||| | | || | || |||||| || |
Sbjct 23091 TGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGC 23032
Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913
||||| ||||| |||||||| | ||||| || | ||||||||| || || ||||||||
Sbjct 23031 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAA 22972
Query 61914 ACGTGTAGGCGACTATCA 61931
|| || | |||||| ||
Sbjct 22971 GCGCGTCGCCGACTACCA 22954
>seq236
Length=53426
Score = 226 bits (250), Expect = 2e-54
Identities = 1209/1901 (64%), Gaps = 94/1901 (5%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
|||||| ||||||||||| | | ||| || |||| || | || ||||||||||||||
Sbjct 6941 ATCGACAGTGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGT 6882
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|||||| ||| ||| || ||| ||||| | || |||| |||| | | | || |
Sbjct 6881 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGAT 6823
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || |||| ||||| |||||| ||| || ||||||||| || ||||
Sbjct 6822 CCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCA 6763
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314
| | | || | || || |||||||||||||||||||| || | | | | ||
Sbjct 6762 TCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGT-GCCTTGATATCT 6704
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374
|| || | ||||| ||| | || || ||||| || || || |||
Sbjct 6703 TCGGGGATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATG 6644
Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTT 65432
| || ||||| | || |||| || | |||| ||| | | |||| || |
Sbjct 6643 GCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAG--AAGCCAGGGGTTGACAACCT 6586
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
|||||||||||| || ||||| || ||||||||||| ||| ||| || ||| | |
Sbjct 6585 GGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACT 6526
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552
| |||| || ||||| |||| ||| ||||||||||| || |||| | ||| ||
Sbjct 6525 CGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGT 6466
Query 65553 TTCGCAATCCGT--TCATTTCAATGTTG--TGACGCAATTCGTCCCAGTTCCACA--TC- 65605
| ||| |||| || || || | ||| || | |||||| | ||||| ||
Sbjct 6465 TGCGCGTACCGTGCTCCTTGATCTGCTCCTTGA-GCGA---GTCCCACTCCCACAGGTCA 6410
Query 65606 ---GGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACT 65658
||||| ||||||| ||||| || ||| ||| | || |||
Sbjct 6409 GAGGGTTT------GACATCC------CACATGTCGAATTGGAGGATGCCCTCGGAT--- 6365
Query 65659 GGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGCTGG 65717
|| ||||| || ||| ||||| |||||| ||||||| | | | || |
Sbjct 6364 -GCAGGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGC 6306
Query 65718 TCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCAT 65777
||| || || ||| || |||||||| || || | || || | ||| |||||
Sbjct 6305 -CTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGG 6247
Query 65778 CGCTCTCGTACGGCATACCCATCAGGACAA---AAGTGTCGGCCAGACCTTGAACTCCAA 65834
||| | ||||| | || || ||| ||| |||||| ||||| || || ||||
Sbjct 6246 GAGACTCAAAGGGCATGCGCA---GGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAA 6190
Query 65835 TACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGA 65894
|| ||||| || || |||| |||| | ||||| | |||||||||| ||||
Sbjct 6189 CGCCAATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGA 6130
Query 65895 TATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGA 65954
||| || || || | ||||| ||||| | || | || | |||
Sbjct 6129 CATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGA--CTTCATGAAGCTTC-- 6074
Query 65955 AATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAG 66014
| ||| | | || | | | || |||| | | || ||||| | ||
Sbjct 6073 --TTAAAGTCAT-AGCAGCCTTCGTTGTAATCGACATAAGCA-----GGGAGGGCCAAAG 6022
Query 66015 ATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074
| || | |||||| ||||| | ||| || ||||| ||||||| ||| |||||||| |
Sbjct 6021 AGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGA 5962
Query 66075 GATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCT 66134
| || || ||| ||||| |||| |||| || || |||||||| ||||| |||||||
Sbjct 5961 GGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCT 5902
Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG-- 66192
|||| | |||| | || | || ||||| |||| || | ||||| | ||| ||
Sbjct 5901 TGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCT 5842
Query 66193 ----AGCGCGT---GCCTTC--ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTC 66243
|||||| | ||| ||| |||| || |||| ||||| | ||
Sbjct 5841 TCTGAGCGCGAATAGTCTTGCGACC--ACGTCCCTCCCTC---------TCGTATTTCTC 5793
Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGTGGA 66301
|| | ||||| | | | ||||| || | ||| | || || | || ||
Sbjct 5792 ATACAAAGCCTCGAAC--TCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGG 5735
Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361
||||| |||| ||| || | || || ||||| ||| || ||||| || ||||||
Sbjct 5734 CACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAG 5675
Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421
|| || ||| | ||||| || || ||| || ||||||| || ||||| | ||
Sbjct 5674 AGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCA 5615
Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481
||||||||||||| |||||| ||||| || || ||||||||||| || | || |||
Sbjct 5614 AGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGC 5555
Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541
||| ||||| ||||| || || | || ||||||||||| || | ||| || |
Sbjct 5554 TTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATA 5495
Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGA 66601
| |||||||| | || |||||||| | ||| || || || || || ||
Sbjct 5494 ATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGG 5435
Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATCGGC-CACTGTCC 66659
|| |||| || |||||||| ||| |||| || || ||||| || | | ||||
Sbjct 5434 ACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTC- 5376
Query 66660 GGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGG 66719
| || || || ||| || |||| ||| | | | ||||||| || ||||
Sbjct 5375 -ATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGG 5317
Query 66720 GTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACA 66779
|| || || | || ||| |||||||| | || || || ||| | | || |||||
Sbjct 5316 CTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACA 5257
Query 66780 TGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACAT 66838
|| ||||| ||||| | |||| ||||||| || || || || | | ||| |
Sbjct 5256 TGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACAC-T 5198
Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898
||||| | | || || ||||| || || | | | | | | || | ||| ||
Sbjct 5197 CGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGAA 5138
Query 66899 CGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
|| ||||| ||||||| || ||||| ||| ||||| ||
Sbjct 5137 CGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 5097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397560383094080
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