Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq246 255 5e-63 seq236 226 2e-54 >seq246 Length=51316 Score = 255 bits (282), Expect = 5e-63 Identities = 581/858 (68%), Gaps = 26/858 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| ||||| ||||||||||| | || ||| | ||| || Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739 Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 ||||| || || | || ||| | || | || | | ||| || ||||| Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGCCTGAATGATGACGAGAAGTAC--TTCATCT 23681 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| ||||||||||| || || || || ||||| ||||| | | || | Sbjct 23680 CTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGC 23621 Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || | ||||| || | | ||||| || || ||||||||||||||||| Sbjct 23620 GCTTCA-GCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 23562 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--C 61378 |||||||| ||||||| |||| ||| | |||||||| || ||||||| |||| | Sbjct 23561 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 23502 Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG-GCGGTGAAGCG-GAA 61436 | | | | || | ||||| ||||| ||||| || || || | || ||| Sbjct 23501 AGCCAGCGCAGCTACC--TCTTCAACGCCATTGAGACCATTCCTTGCATTC--GCAAGAA 23446 Query 61437 AGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTG 61494 || || |||||| |||| |||||| ||| |||| || | |||| | || || Sbjct 23445 GGCCGACTGGGCCATCAAGTGGATC--CAGGACAAGAACTCTTCCTTTGCCCAGCGCCTG 23388 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || ||||| | ||||||||| | || ||||| || | |||||| | ||||| ||| Sbjct 23387 GTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 23328 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 | ||||| || || || ||||| ||||||||||| ||| ||| | || || || ||| Sbjct 23327 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 23268 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 ||||| |||| ||| ||||| |||| || | | | || ||| ||| | Sbjct 23267 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG--CACTCTC-ACCTCAAGAACCGTGCT 23211 Query 61675 TCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCT 61733 ||||| ||| | |||| || | ||| || || || || ||||| || | Sbjct 23210 AGCAAGGAG-GTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTT 23152 Query 61734 GACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATAT 61793 ||| || ||| | ||| | | || | |||||||| | || ||| |||||| || Sbjct 23151 GACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACAT 23092 Query 61794 TGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA 61853 ||| ||||||||||| |||||| | |||| | | || | || |||||| || | Sbjct 23091 TGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGC 23032 Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| ||||| |||||||| | ||||| || | ||||||||| || || |||||||| Sbjct 23031 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAA 22972 Query 61914 ACGTGTAGGCGACTATCA 61931 || || | |||||| || Sbjct 22971 GCGCGTCGCCGACTACCA 22954 >seq236 Length=53426 Score = 226 bits (250), Expect = 2e-54 Identities = 1209/1901 (64%), Gaps = 94/1901 (5%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||||||||| | | ||| || |||| || | || |||||||||||||| Sbjct 6941 ATCGACAGTGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGT 6882 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || ||| ||||| | || |||| |||| | | | || | Sbjct 6881 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGAT 6823 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| ||||| |||||| ||| || ||||||||| || |||| Sbjct 6822 CCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCA 6763 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | || | || || |||||||||||||||||||| || | | | | || Sbjct 6762 TCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGT-GCCTTGATATCT 6704 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | ||||| ||| | || || ||||| || || || ||| Sbjct 6703 TCGGGGATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATG 6644 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGACTT 65432 | || ||||| | || |||| || | |||| ||| | | |||| || | Sbjct 6643 GCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAG--AAGCCAGGGGTTGACAACCT 6586 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || ||||| || ||||||||||| ||| ||| || ||| | | Sbjct 6585 GGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACT 6526 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | |||| || ||||| |||| ||| ||||||||||| || |||| | ||| || Sbjct 6525 CGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGT 6466 Query 65553 TTCGCAATCCGT--TCATTTCAATGTTG--TGACGCAATTCGTCCCAGTTCCACA--TC- 65605 | ||| |||| || || || | ||| || | |||||| | ||||| || Sbjct 6465 TGCGCGTACCGTGCTCCTTGATCTGCTCCTTGA-GCGA---GTCCCACTCCCACAGGTCA 6410 Query 65606 ---GGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACT 65658 ||||| ||||||| ||||| || ||| ||| | || ||| Sbjct 6409 GAGGGTTT------GACATCC------CACATGTCGAATTGGAGGATGCCCTCGGAT--- 6365 Query 65659 GGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGCTGG 65717 || ||||| || ||| ||||| |||||| ||||||| | | | || | Sbjct 6364 -GCAGGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGC 6306 Query 65718 TCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCAT 65777 ||| || || ||| || |||||||| || || | || || | ||| ||||| Sbjct 6305 -CTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGG 6247 Query 65778 CGCTCTCGTACGGCATACCCATCAGGACAA---AAGTGTCGGCCAGACCTTGAACTCCAA 65834 ||| | ||||| | || || ||| ||| |||||| ||||| || || |||| Sbjct 6246 GAGACTCAAAGGGCATGCGCA---GGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAA 6190 Query 65835 TACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGA 65894 || ||||| || || |||| |||| | ||||| | |||||||||| |||| Sbjct 6189 CGCCAATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGA 6130 Query 65895 TATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGA 65954 ||| || || || | ||||| ||||| | || | || | ||| Sbjct 6129 CATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGA--CTTCATGAAGCTTC-- 6074 Query 65955 AATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAG 66014 | ||| | | || | | | || |||| | | || ||||| | || Sbjct 6073 --TTAAAGTCAT-AGCAGCCTTCGTTGTAATCGACATAAGCA-----GGGAGGGCCAAAG 6022 Query 66015 ATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074 | || | |||||| ||||| | ||| || ||||| ||||||| ||| |||||||| | Sbjct 6021 AGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGA 5962 Query 66075 GATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCT 66134 | || || ||| ||||| |||| |||| || || |||||||| ||||| ||||||| Sbjct 5961 GGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCT 5902 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG-- 66192 |||| | |||| | || | || ||||| |||| || | ||||| | ||| || Sbjct 5901 TGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCT 5842 Query 66193 ----AGCGCGT---GCCTTC--ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTC 66243 |||||| | ||| ||| |||| || |||| ||||| | || Sbjct 5841 TCTGAGCGCGAATAGTCTTGCGACC--ACGTCCCTCCCTC---------TCGTATTTCTC 5793 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGTGGA 66301 || | ||||| | | | ||||| || | ||| | || || | || || Sbjct 5792 ATACAAAGCCTCGAAC--TCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGG 5735 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||| |||| ||| || | || || ||||| ||| || ||||| || |||||| Sbjct 5734 CACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAG 5675 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 || || ||| | ||||| || || ||| || ||||||| || ||||| | || Sbjct 5674 AGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCA 5615 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 ||||||||||||| |||||| ||||| || || ||||||||||| || | || ||| Sbjct 5614 AGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGC 5555 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||| ||||| ||||| || || | || ||||||||||| || | ||| || | Sbjct 5554 TTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATA 5495 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGA 66601 | |||||||| | || |||||||| | ||| || || || || || || Sbjct 5494 ATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGG 5435 Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATCGGC-CACTGTCC 66659 || |||| || |||||||| ||| |||| || || ||||| || | | |||| Sbjct 5434 ACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTC- 5376 Query 66660 GGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGG 66719 | || || || ||| || |||| ||| | | | ||||||| || |||| Sbjct 5375 -ATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGG 5317 Query 66720 GTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACA 66779 || || || | || ||| |||||||| | || || || ||| | | || ||||| Sbjct 5316 CTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACA 5257 Query 66780 TGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACAT 66838 || ||||| ||||| | |||| ||||||| || || || || | | ||| | Sbjct 5256 TGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACAC-T 5198 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898 ||||| | | || || ||||| || || | | | | | | || | ||| || Sbjct 5197 CGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGAA 5138 Query 66899 CGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || ||||| ||||||| || ||||| ||| ||||| || Sbjct 5137 CGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 5097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560383094080