Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1017 488 9e-136
seq230 293 4e-77
>seq1017
Length=943
Score = 488 bits (540), Expect = 9e-136
Identities = 286/295 (97%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 737 TACTAAGCTCAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 679
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 619
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 618 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 559
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 499
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 444
>seq230
Length=50958
Score = 293 bits (324), Expect = 4e-77
Identities = 189/207 (91%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40140 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 40199
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct 40200 CATCGAAGGATCAAAAAGCGACGTCGCTATCAACGCTTGGCCGCCACAAGCCAGTTATCC 40259
Query 211 CTGTGGT-----AACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265
||||||| |||| ||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 40260 CTGTGGTGGTTATACTTCCCTGGCACCTCTAGCCTCTAATGTCGAGAGACTAAAGGATCG 40319
Query 266 ATAGGCCACACTTTCATGGTTTGTATT 292
|||| |||||||||||| || |||||
Sbjct 40320 ATAGATCACACTTTCATGATTGGTATT 40346
Score = 131 bits (144), Expect = 3e-28
Identities = 83/89 (93%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 4 TAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGA 63
||||| ||||||||||| || || |||||||||||||||||||||||||||||||| ||
Sbjct 39588 TAAGCTCAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCACGA 39646
Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||
Sbjct 39647 CGGTCTAAACCCAGCTCACGTTCCCTATT 39675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854390994624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |