Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1011 255 5e-63 seq160 194 1e-44 >seq1011 Length=119094 Score = 255 bits (282), Expect = 5e-63 Identities = 583/858 (68%), Gaps = 26/858 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | || ||| | ||| || Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGA-GCGGTGAACAACATTTCATTA 61201 ||||| || || | |||||| | || | | ||| | | ||| || ||||| Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTAC--TTCATCT 29072 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| ||||||||||| || || || || ||||| ||||| | | || | Sbjct 29073 CTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGC 29132 Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || | ||||| || | | ||||| || || ||||||||||||||||| Sbjct 29133 GCTTCA-GCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 29191 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--C 61378 |||||||| ||||||| |||| ||| | |||||||| || ||||||| |||| | Sbjct 29192 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 29251 Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG-GCGGTGAAGCG-GAA 61436 | | | | || | ||||| ||||| ||||| || || || | || ||| Sbjct 29252 AGCCAGCGCAGCTACC--TCTTCAACGCCATTGAGACCATTCCTTGCATTC--GCAAGAA 29307 Query 61437 AGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTG 61494 || || |||||| |||| |||||| ||| |||| || | |||| | || || Sbjct 29308 GGCCGACTGGGCCATCAAGTGGATC--CAGGACAAGAACTCTTCCTTTGCCCAGCGCCTG 29365 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || ||||| | ||||||||| | || ||||| || | |||||| | ||||| ||| Sbjct 29366 GTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 29425 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 | ||||| || || || ||||| ||||||||||| ||| ||| | || || || ||| Sbjct 29426 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 29485 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 ||||| |||| ||| ||||| |||| || | | | || ||| ||| | Sbjct 29486 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG--CACTCTC-ACCTCAAGAACCGTGCC 29542 Query 61675 TCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCT 61733 ||||| ||| | |||| || | || || || || || |||||||| | Sbjct 29543 AGCAAGGAG-GTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTT 29601 Query 61734 GACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATAT 61793 ||| || ||| | ||| | | || |||||||||| | || ||| |||||| || Sbjct 29602 GACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 29661 Query 61794 TGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA 61853 || |||||||||||||||||| | |||| | | || | || |||||| || | Sbjct 29662 CGAGTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGC 29721 Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| ||||| |||||||| | ||||| || | ||||||||| || || || ||||| Sbjct 29722 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAA 29781 Query 61914 ACGTGTAGGCGACTATCA 61931 ||||| | |||||| || Sbjct 29782 GCGTGTCGCCGACTACCA 29799 >seq160 Length=70483 Score = 194 bits (214), Expect = 1e-44 Identities = 541/824 (66%), Gaps = 26/824 (3%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||| | ||| || |||||||| ||||| | |||||| || || ||||||| Sbjct 49250 GGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACTCGATG 49309 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || |||||||| || || || ||| ||||| |||| |||| || || |||||||| Sbjct 49310 ATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGG 49369 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||| | |||| | || | || ||||| |||| ||| | |||| Sbjct 49370 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAGATG 49429 Query 66182 GCGTGCCAAAG------AGCGCGT---GCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 | | ||| || |||||| | ||| |||| |||| |||| Sbjct 49430 GAATACCACAGCTTCTGAGCGCGAATGGTCTTGCGGCCACGT----CCCT-CCTTC---- 49480 Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGAC 66290 ||||| | || || | ||||| | | | ||||| || | || | || | Sbjct 49481 TCGTACTTCTCATACAAAGCCTCGAAC--TCCTCGCCATAGCAGTCAGCAAGGCCAGGGC 49538 Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350 | | || || ||||| |||| ||| || | || || ||||| ||| || |||| Sbjct 49539 ATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGAT 49598 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410 | || |||||||| || ||| | || || || || ||| || ||||||| || | Sbjct 49599 CGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCT 49658 Query 66411 TGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470 |||| | || ||||||||||||| ||| || ||||| || || ||||||||||| || | Sbjct 49659 TGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGG 49718 Query 66471 AGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCA 66530 || ||| ||| ||||| || ||||| || | || |||||||| || || | Sbjct 49719 CACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAA 49778 Query 66531 ACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCC 66590 ||| || | | |||||||| | || |||||||| | ||| || || || | Sbjct 49779 GCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC 49838 Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGG 66650 | || ||| || |||| || |||||||| ||| |||| || || ||||| || Sbjct 49839 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACA--CGT 49896 Query 66651 C--CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708 | || || | || || || ||| |||| |||| ||| | | | ||||||| Sbjct 49897 CTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCATGA 49956 Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768 || |||| | || || |||| ||| |||||||| | || || || ||| | Sbjct 49957 GGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAA 50016 Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 | || ||||||| ||||| ||||| | |||| ||||||| Sbjct 50017 CTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGT 50060 Score = 113 bits (124), Expect = 4e-20 Identities = 311/468 (66%), Gaps = 8/468 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || | | ||| || |||| || | || |||||||||||||| Sbjct 48343 ATCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGT 48402 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||| ||| ||| || ||| ||||| | || |||| |||| | | | || | Sbjct 48403 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGGT 48461 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| ||||| |||||| ||| || ||||||||| || |||| Sbjct 48462 CCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCA 48521 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | || | || || |||||||||||||||||||| ||| | | | | || Sbjct 48522 TCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGG-GCCTTGATATCT 48580 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | |||| ||| | || || ||||| || || || ||| Sbjct 48581 TCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATG 48640 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGATGACTT 65432 | || ||||| | || |||| || | |||| ||| | | |||| || | Sbjct 48641 GCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGA--GAAGCCAGGGGTTGACAACCT 48698 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || ||||| || ||||||||||| ||| ||| || ||| | | Sbjct 48699 GGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACT 48758 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGA 65540 | ||||||| ||||| |||| ||| ||||||||||| || |||| Sbjct 48759 CGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGA 48806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562892990560