Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08]
1,054 sequences; 40,676,380 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 255 5e-63
seq160 194 1e-44
>seq1011
Length=119094
Score = 255 bits (282), Expect = 5e-63
Identities = 583/858 (68%), Gaps = 26/858 (3%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || ||||||||||| | || ||| | ||| ||
Sbjct 28955 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 29014
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGA-GCGGTGAACAACATTTCATTA 61201
||||| || || | |||||| | || | | ||| | | ||| || |||||
Sbjct 29015 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTAC--TTCATCT 29072
Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261
|| | |||| ||||||||||| || || || || ||||| ||||| | | || |
Sbjct 29073 CTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGC 29132
Query 61262 GTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320
| ||| || | ||||| || | | ||||| || || |||||||||||||||||
Sbjct 29133 GCTTCA-GCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 29191
Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--C 61378
|||||||| ||||||| |||| ||| | |||||||| || ||||||| |||| |
Sbjct 29192 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 29251
Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG-GCGGTGAAGCG-GAA 61436
| | | | || | ||||| ||||| ||||| || || || | || |||
Sbjct 29252 AGCCAGCGCAGCTACC--TCTTCAACGCCATTGAGACCATTCCTTGCATTC--GCAAGAA 29307
Query 61437 AGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTG 61494
|| || |||||| |||| |||||| ||| |||| || | |||| | || ||
Sbjct 29308 GGCCGACTGGGCCATCAAGTGGATC--CAGGACAAGAACTCTTCCTTTGCCCAGCGCCTG 29365
Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554
| || ||||| | ||||||||| | || ||||| || | |||||| | ||||| |||
Sbjct 29366 GTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 29425
Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614
| ||||| || || || ||||| ||||||||||| ||| ||| | || || || |||
Sbjct 29426 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 29485
Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674
||||| |||| ||| ||||| |||| || | | | || ||| ||| |
Sbjct 29486 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG--CACTCTC-ACCTCAAGAACCGTGCC 29542
Query 61675 TCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCT 61733
||||| ||| | |||| || | || || || || || |||||||| |
Sbjct 29543 AGCAAGGAG-GTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAGGAATTCTT 29601
Query 61734 GACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATAT 61793
||| || ||| | ||| | | || |||||||||| | || ||| |||||| ||
Sbjct 29602 GACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 29661
Query 61794 TGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA 61853
|| |||||||||||||||||| | |||| | | || | || |||||| || |
Sbjct 29662 CGAGTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGC 29721
Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913
||||| ||||| |||||||| | ||||| || | ||||||||| || || || |||||
Sbjct 29722 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTTGAGAA 29781
Query 61914 ACGTGTAGGCGACTATCA 61931
||||| | |||||| ||
Sbjct 29782 GCGTGTCGCCGACTACCA 29799
>seq160
Length=70483
Score = 194 bits (214), Expect = 1e-44
Identities = 541/824 (66%), Gaps = 26/824 (3%)
Strand=Plus/Plus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
|| ||||| | ||| || |||||||| ||||| | |||||| || || |||||||
Sbjct 49250 GGGAGGGCCAAAGAGGCCAGGTTGCAAACAGCAACCTCGTCTGGGGCACAGTACTCGATG 49309
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
|| |||||||| || || || ||| ||||| |||| |||| || || ||||||||
Sbjct 49310 ATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGG 49369
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||||| ||||||||||| | |||| | || | || ||||| |||| ||| | ||||
Sbjct 49370 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAAGATG 49429
Query 66182 GCGTGCCAAAG------AGCGCGT---GCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232
| | ||| || |||||| | ||| |||| |||| ||||
Sbjct 49430 GAATACCACAGCTTCTGAGCGCGAATGGTCTTGCGGCCACGT----CCCT-CCTTC---- 49480
Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGAC 66290
||||| | || || | ||||| | | | ||||| || | || | || |
Sbjct 49481 TCGTACTTCTCATACAAAGCCTCGAAC--TCCTCGCCATAGCAGTCAGCAAGGCCAGGGC 49538
Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350
| | || || ||||| |||| ||| || | || || ||||| ||| || ||||
Sbjct 49539 ATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGAT 49598
Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410
| || |||||||| || ||| | || || || || ||| || ||||||| || |
Sbjct 49599 CGGGAATCCAGAGAGCAAGGAACAAGTCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCT 49658
Query 66411 TGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470
|||| | || ||||||||||||| ||| || ||||| || || ||||||||||| || |
Sbjct 49659 TGCGGAGATCAAGGAACTCAAAGACGTCAGCGTGCCAGGGCTCGAGGTAGATGGCAAAGG 49718
Query 66471 AGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCA 66530
|| ||| ||| ||||| || ||||| || | || |||||||| || || |
Sbjct 49719 CACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAA 49778
Query 66531 ACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCC 66590
||| || | | |||||||| | || |||||||| | ||| || || || |
Sbjct 49779 GCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC 49838
Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGG 66650
| || ||| || |||| || |||||||| ||| |||| || || ||||| ||
Sbjct 49839 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACA--CGT 49896
Query 66651 C--CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708
| || || | || || || ||| |||| |||| ||| | | | |||||||
Sbjct 49897 CTTCAGAGTGTCATAGATACCCTCGATGCTGTCATCCTTCATGTCGACCAAGAAGCATGA 49956
Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768
|| |||| | || || |||| ||| |||||||| | || || || ||| |
Sbjct 49957 GGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAA 50016
Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812
| || ||||||| ||||| ||||| | |||| |||||||
Sbjct 50017 CTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGT 50060
Score = 113 bits (124), Expect = 4e-20
Identities = 311/468 (66%), Gaps = 8/468 (2%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||| || || | | ||| || |||| || | || ||||||||||||||
Sbjct 48343 ATCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGT 48402
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|||||| ||| ||| || ||| ||||| | || |||| |||| | | | || |
Sbjct 48403 CTTGAGACCAAGCTTCCAGCCAGTGAAGTGCAT-GCTGGTAATCTTGCCCATTGTGGGGT 48461
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || |||| ||||| |||||| ||| || ||||||||| || ||||
Sbjct 48462 CCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCA 48521
Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314
| | | || | || || |||||||||||||||||||| ||| | | | | ||
Sbjct 48522 TCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGG-GCCTTGATATCT 48580
Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374
|| || | |||| ||| | || || ||||| || || || |||
Sbjct 48581 TCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATG 48640
Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGATGACTT 65432
| || ||||| | || |||| || | |||| ||| | | |||| || |
Sbjct 48641 GCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGA--GAAGCCAGGGGTTGACAACCT 48698
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
|||||||||||| || ||||| || ||||||||||| ||| ||| || ||| | |
Sbjct 48699 GGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACT 48758
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGA 65540
| ||||||| ||||| |||| ||| ||||||||||| || ||||
Sbjct 48759 CGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGA 48806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562892990560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |