Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq4 111 7e-19 seq7 89.7 2e-12 >seq4 Length=3617723 Score = 111 bits (122), Expect = 7e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349075 GTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGC 349134 || |||||| |||||||| | ||||| || || || |||||||||| | || || || Sbjct 1843988 GTTGAGAATTTCCTTGAGACGGGGCACACCGAGCGTGACGTTCTTGGAAGACACACCAGC 1843929 Query 349135 AAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAG 349194 ||||||||||| | || |||| ||||||| |||||| |||||| |||| ||||||| Sbjct 1843928 GAAGTGGAAGGTGTTCAGAGTCATCTGCGTGGCGGGCTCACCGATGGACTGAGCCGCGAG 1843869 Query 349195 GATGCCTACCATCTCGCCGGG 349215 || || ||||| || ||||| Sbjct 1843868 GACACCGACCATTTCACCGGG 1843848 >seq7 Length=2761852 Score = 89.7 bits (98), Expect = 2e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 349096 GGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGT 349155 ||| || ||||| ||||||||||| |||| | |||||| || |||||||| | ||| || Sbjct 1115678 GGGGATACCCAGTGTCACGTTCTTCGCCGAGTGGCCGGCCAAATGGAAGGTGTTGAGCGT 1115737 Query 349156 CAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCGGG 349215 || |||||| |||||||||| | | ||||| || | |||||| || ||| || || Sbjct 1115738 CATCTGCGTCGACGGCTCGCCGACGGATTGGCCGGCAACGATGCCGACGGCCTCCCCAGG 1115797 Query 349216 CGCG 349219 | || Sbjct 1115798 CTCG 1115801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738844291374