Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2224 167 1e-39 seq946 96.9 2e-18 >seq2224 Length=11470 Score = 167 bits (184), Expect = 1e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| || ||||||| |||||||| || Sbjct 10107 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGCGTCAAAAATGTAACATCGTCC 10166 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 10167 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 10223 >seq946 Length=53277 Score = 96.9 bits (106), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 10/116 (9%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGA--GCGAGTCAAAATGATAACATCGCCCGATCCCTA 68 ||||| ||||||| ||||||||||| | | ||||||| |||||||| ||||| |||| Sbjct 23893 ACTTTAATTTCTCATAAGGTGCCGAACGTGCGTCAAAAATGTAACATCGTCCGAT-CCTA 23951 Query 69 GTCGGCATAGTTTACGGTTAAGACTAC-------GACGGTATCTGATCGTCTTCGA 117 || ||||| |||| ||||||||||| ||||||||||||||||||| || Sbjct 23952 GTTAGCATATTTTATAGTTAAGACTACTCCGTATGACGGTATCTGATCGTCTTTGA 24007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278393853450