Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2224 482 4e-134
seq1692 170 4e-40
seq946 105 1e-20
>seq2224
Length=11470
Score = 482 bits (534), Expect = 4e-134
Identities = 296/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 10537 TGGTCCGGCCGGGCCTTTCCCTCTGCGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 10478
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 10477 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCAAGGCAGGCCTATGCTCGAATACAT 10418
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 10417 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 10358
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 10357 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 10298
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 10297 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 10239
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 10238 ACGAAAGTTAGGGG 10225
>seq1692
Length=29617
Score = 170 bits (188), Expect = 4e-40
Identities = 100/104 (96%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 112 TGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2 TGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTT 61
Query 172 CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215
|||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 62 CTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAG 105
>seq946
Length=53277
Score = 105 bits (116), Expect = 1e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303
|| || |||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 24082 GAATTGTTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-G 24024
Query 304 AACGAAAGTTAGGGG 318
|||||||||||||||
Sbjct 24023 AACGAAAGTTAGGGG 24009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915178447040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |