Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2224 163 3e-38 seq1692 91.5 2e-16 >seq2224 Length=11470 Score = 163 bits (180), Expect = 3e-38 Identities = 155/193 (80%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 10367 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 10426 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| |||| |||||||||||| |||| |||||||||||| |||| | || Sbjct 10427 AGCATAGGCCTGCCTTGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 10486 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCA-AGAGGTAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| ||| || || || | ||| | || |||| | ||| Sbjct 10487 CACCCAGTGAAGGGCAT-GGGGTTCCGCAGAGGGAAAGGCCCGGCCGGACCAGTGCACGC 10545 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 10546 GGTGAGGCGGACC 10558 >seq1692 Length=29617 Score = 91.5 bits (100), Expect = 2e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 65 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 6 Query 66 GGC 68 || Sbjct 5 AGC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595186421070