Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2224 455 6e-126
seq97 251 1e-64
seq946 80.6 5e-13
>seq2224
Length=11470
Score = 455 bits (504), Expect = 6e-126
Identities = 288/309 (93%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 9888 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 9829
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9828 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 9769
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | || |||||||||
Sbjct 9768 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 9711
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 9710 GAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 9651
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 9650 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 9591
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 9590 CCCTTTGTA 9582
>seq97
Length=7303
Score = 251 bits (278), Expect = 1e-64
Identities = 171/187 (91%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 16 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 75
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA-TGCCC-T 137
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 76 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGACTGCCCGT 135
Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197
|||||||||||||||||||||||||||||||||| |||||| ||||| | || |||||||
Sbjct 136 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGC 193
Query 198 CGGAAGG 204
|||||||
Sbjct 194 CGGAAGG 200
>seq946
Length=53277
Score = 80.6 bits (88), Expect = 5e-13
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 56 TTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGC 115
|||||| | | ||| || |||||||||| ||||||| |||||||||||||||| | ||
Sbjct 23327 TTTGGCAGTAGGGCGGTTTTTTAGAGGGACCATCGGCTTAAGCCGATGGAAGTTTAAAGC 23268
Query 116 AATAACAGGTCT 127
||||||||||||
Sbjct 23267 AATAACAGGTCT 23256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947177693440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |