Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq844 235 9e-60
seq96 77.0 5e-12
>seq844
Length=1552
Score = 235 bits (260), Expect = 9e-60
Identities = 225/279 (81%), Gaps = 8/279 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 860 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 803
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 802 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 743
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| ||||| | | || |||| | ||| |||| | |||||||||||||| |
Sbjct 742 GAACGCGGTGA-TAGCACCCGCACGT-ATAGACGGACAAGAATAGGCTTCGGCTTAGTGT 685
Query 181 CTTAGCAGGC-CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239
|| ||||||| | | | |||| |||||| | ||| | | | ||| ||||
Sbjct 684 CTCAGCAGGCGATTCCTCCGTGGTCC--TCGAAGCGGGCCGCGGT-ATTTCGCGTATTGT 628
Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||| || | || ||| |||||||||||||||||||
Sbjct 627 AATTTCAACACGAGCGGGGTTAAATCCTTTGCAGACGAC 589
>seq96
Length=7317
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/66 (89%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGA-CCAGGCAG 59
|||||||||||||||| | |||||| ||||||||||||||||||||| || || |||||
Sbjct 7249 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGATCCGGGCAG 7306
Query 60 TGCCGC 65
||||||
Sbjct 7307 TGCCGC 7312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819181310720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |