Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2224 708 0.0 seq920 138 3e-30 seq1519 131 5e-28 >seq2224 Length=11470 Score = 708 bits (784), Expect = 0.0 Identities = 460/504 (91%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10694 GTACTCATTCCGATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 10753 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 10754 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 10813 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 10814 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCCACCATGTTT 10873 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 10874 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAGCCATCGCCGGCA 10933 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| ||||||| |||||| |||| |||||| ||||||||| |||| ||||| Sbjct 10934 CAAGGCCTGTCGATTCGACTAGTTATCATGATTCACCAGAGAGCCCCGAGGGGCATTGGT 10993 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||| Sbjct 10994 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTAG 11053 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||| ||| ||||||||||||||||||| || |||||| Sbjct 11054 AATTACCACGGTTATCCAAGTAGTAAAGTATTATCAAATAAACGATAACTTATATAATGA 11113 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 11114 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 11172 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 11173 AGACAAGCATATGACTACTGGCAG 11196 >seq920 Length=1349 Score = 138 bits (152), Expect = 3e-30 Identities = 84/88 (95%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476 ||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||| Sbjct 554 ATGAGCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTGGACATGCATGGCTTAATC 612 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 613 TTTGAGACAAGCATATGACTACTGGCAG 640 >seq1519 Length=43333 Score = 131 bits (144), Expect = 5e-28 Identities = 96/112 (86%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 252 GATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAA 311 |||||| ||| || |||| |||||| ||||||||| |||| ||||||||| ||| || Sbjct 26975 GATTCGACTAGTCATCATGATTCACCAGAGAGCCCCGAGGGGCATTGGTTTTTAATCCAA 26916 Query 312 TAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAAT 363 |||||||| |||||||||||||||| |||| |||||||||| |||||||||| Sbjct 26915 TAAATACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTGGCTCTAGAAT 26864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510364430080