Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq2224 708 0.0
seq920 138 3e-30
seq1519 131 5e-28
>seq2224
Length=11470
Score = 708 bits (784), Expect = 0.0
Identities = 460/504 (91%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10694 GTACTCATTCCGATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 10753
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 10754 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 10813
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 10814 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCCACCATGTTT 10873
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 10874 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAGCCATCGCCGGCA 10933
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||| ||||||| |||||| |||| |||||| ||||||||| |||| |||||
Sbjct 10934 CAAGGCCTGTCGATTCGACTAGTTATCATGATTCACCAGAGAGCCCCGAGGGGCATTGGT 10993
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 10994 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTAG 11053
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||| ||| ||||||||||||||||||| || ||||||
Sbjct 11054 AATTACCACGGTTATCCAAGTAGTAAAGTATTATCAAATAAACGATAACTTATATAATGA 11113
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 11114 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 11172
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 11173 AGACAAGCATATGACTACTGGCAG 11196
>seq920
Length=1349
Score = 138 bits (152), Expect = 3e-30
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476
||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||
Sbjct 554 ATGAGCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTGGACATGCATGGCTTAATC 612
Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||
Sbjct 613 TTTGAGACAAGCATATGACTACTGGCAG 640
>seq1519
Length=43333
Score = 131 bits (144), Expect = 5e-28
Identities = 96/112 (86%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 252 GATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAA 311
|||||| ||| || |||| |||||| ||||||||| |||| ||||||||| ||| ||
Sbjct 26975 GATTCGACTAGTCATCATGATTCACCAGAGAGCCCCGAGGGGCATTGGTTTTTAATCCAA 26916
Query 312 TAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAAT 363
|||||||| |||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 26915 TAAATACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTGGCTCTAGAAT 26864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510364430080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |